BAC Information

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BAC

Clone NameMSMg01-313E14
Chromosome6 (Build37)
Map Location 110,360,583 - 110,361,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313E14.T7 (MSMg01no313_e14.b1)MSMg01-313E14.TJ (MSMg01no313_e14.g1)
ACCAG435260AG435261
length1,2891,305
length of high quality
(start - end)
712 (130 - 841)370 (513 - 882)
definitionCHROMAT_FILE: MSMg01no313_e14.b1 PHD_FILE: MSMg01no313_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:48 2005CHROMAT_FILE: MSMg01no313_e14.g1 PHD_FILE: MSMg01no313_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTTTGNNNNNNCCAGTGGGCGCTAAGACTCACTAAGGGAGAGGAT
CCGCGGAATTCCTCCATGGTTTCTGCCCCTTAAAAGATTTTCCTCTGTGA
TGGTCAGGGACCTGTGACTTTAAACCAGATAAACCTTCCTTCCTCTGTGC
TGCCTTTGGTGATGGCATTTATCACAGTGACAAACTAGAGCACAGCCTGG
GCCAGCGTGTCTAATGTTCTGGAAGATCAAACTCTGTTCTTCAACACTCC
CGAGAAAAGCATGTTATGGGTTGAGTCATCTTTCTAGGCTCCTTTTTTCC
CCTCTTTGACTATCTCGTAATGTTTTTATTTCTTTCTCATCATCTCTTTA
CACTTCATTTATCTATCCATCTATTTACTCTTATATCTAGATATAAAGGC
AGTATATTTTTAGCCTCAATTATGTATTTATGTAAGCTCTGTGATATATT
AAATATTTTAAAAGTTAAGGATGTTTTATTTTGTTGTTCTCAATTTTAAT
ATTTATAATTATGAACCAAATTTTACCTGATTATAGTTCCCTTGAATTTT
AATGTTTTGAAGCTATTAATTTTGTTTAAAGCATTTATCAGGTTAACAGT
TTTATTAATAATTTTATATCATAGGATTTATTTAATCAACTAAACTGATT
AACAATATATCATTACAAGTACCTTAAGAAGTGGATTTACCAAAGAACCA
TGTAACACATATTTAAACCTAAGCTGTAAAAATCACAATTAGATCAATTC
TAGCACTACAAAATGTGTATAGTAAGTTGCATCAACAGCTTAGGTATCTT
GCAACTATAAGATATTGAGACTATTGTTATATATTGAAGTTTCTTGATAT
GAATAAAGTACATCTATCACAATGTATTGTCCGAATATGTTCTCGNGTTA
TTTATATATTGATCATCTATGTTGCTTTAAAAAACCGAAAAATAGAAAAT
AGGTAACCCTAGCTATTCTTTGACTGGCATGCTGCGGTAAATTAAAGTTA
TACTTTCAGTGAAAAGCTAAATTCCTCTTTAAGCCCCAGGCGGGTGCCTA
TAACCTGATGAATGGAAAATATTAAGCCTGGAGGAGGAAAACCCTTCTCA
ATTTTCCCCGCTATTAAAAATTTTTTAAAGAAATCCCCTCCTGGGCCTAA
ACACTTTTTTTTCAATATTAAAAAAAATCTTCCTTAAATTCTGGGGGGAA
ACAAAGATCCTATATTTTTTTGGGTGTTCATATAACAACTTACTTTATAG
TTCGTATTTTCGGATGGGGTTAATATATATTACAAACTC
NCCACAATNNNNNNAAACACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAGGATGACCGCC
TCTTAAGCCTGTAGCACCACTTTTTGAATATGCTGCCTTTTTTTCCACTG
GATGGTTTTAGTTTCTTTGTGAAAGATCAAGTGGCCATAGTTCTGAGGGT
TCATTTCTGGGACTTCAATTCTATTCCCTTGATTCACTTGTCTGTCTGTG
CACCAAGTCATCAGGAAAATGCAAATCAAAATGACCCTGACAGTTCACCT
CACACGAGTAATAATGGCTAAAATCAAATACTTAGGTGACAACAGAAGCT
GGCAAGGATGTAGACAAAGAGGAACAGTCCTCCATTGCTTGTGGGATAGA
AAGCTAGTAAAACCCTTTTGCAAACTGGTCTAGCCATTCTTCAGAAAATT
GAACATTGTACTTTTTATTGACCCCCCTATACCACTCCTGGGCATATACA
CAAAAGATGTTCCAACATATAACTAGGACACATGTTCCACTATGTTCATA
GCAGCCCTATTTATAATTGCAGAAGCTAGAGAGAACCTAGATGTCCCTCA
ACAGAGAAATAGATACAGAAAATATGGTACATTTACCCAATGGAGTACTA
CTCAGCTATTAAAAACAATGATTTCATGAAATTCTTAGACAAATGGATGG
AACTAGAAAATATCATCCTGAATGAGGTAACCCAGTCACAGAAGAACACG
CATGGTATGTACTGACTGATAATTGAATATTAGCCAAAAAGAAGCTTGGA
ATACCCATGATACAACTCACAGAGCATATGAAGCTCAAGAAGAAAGAAGA
TCTAAGTGTGGATGCTTCAGTACTGCTTAGAAAGAGCAAGAAAATAAAAA
TGGGATTTAGAGGATATGAGAAATTGGGTGGAAGAGAAGAGGGGGATGGG
ATACAAGTGGAACAGGATAAGGTATAAAAGAAAAGGAGAGATGTACCGAG
GGCCAGGAAATTTAACAAAATGTGGCATTAATGGGGTTGATGAAACCCCT
GGTGTATTTCCCCATAACTTCCCAGGTCCGAAAAACTAAAATTCTCCCAA
ACCCGTGGGTATGACTTCTGTTGGAAAATTCCCCATAGGTGGCATAAACC
TTGTTACACACATTTTTATACTTTATCTTCCCCTCACACATATAAGTCCT
CCCCACTTCCCTAATTTTTTATCCACGTTTTCCTCTTATTACCTCATGTC
ATTTTAATATCATACTTCGCTCCTCTCTTCTATTTCCCTCTTCTTCCTCC
TATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_e14.b1 MSMg01no313_e14.b1 CHROMAT_FILE:
MSMg01no313_e14.b1 PHD_FILE: MSMg01no313_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:48 2005
         (712 letters)



>mm_chr6_110360385_110361496
          Length = 1112

 Score = 1183 bits (612), Expect = 0.0
 Identities = 688/714 (96%), Gaps = 2/714 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaccttccttcctctgtgctgcctttggtgatggcatttatcacagtgacaaactaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 taaaccttccttcctctgtgctgcctttggtgatggcatttatcacagtgacaaactaga 258

                                                                       
Query: 61  gcacagcctgggccagcgtgtctaatgttctggaagatcaaactctgttcttcaacactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcacagcctgggccagcgtgtctaatgttctggaagatcaaactctgttcttcaacactc 318

                                                                       
Query: 121 ccgagaaaagcatgttatgggttgagtcatctttctaggctcctttttt--cccctcttt 178
           ||| |||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||
Sbjct: 319 ccgggaaaagcatgctatggattgagtcatctttctaggctccttttttttcccctcttt 378

                                                                       
Query: 179 gactatctcgtaatgtttttatttctttctcatcatctctttacacttcatttatctatc 238
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 379 gactatctcgtaatgtttttatttctttatcatcatatctttacacttcatttatctatc 438

                                                                       
Query: 239 catctatttactcttatatctagatataaaggcagtatatttttagcctcaattatgtat 298
           |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||
Sbjct: 439 catctatttactcttatatctagatataaaggcagtatatatggagcctcaattatgtat 498

                                                                       
Query: 299 ttatgtaagctctgtgatatattaaatattttaaaagttaaggatgttttattttgttgt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttatgtaagctctgtgatatattaaatattttaaaagttaaggatgttttattttgttgt 558

                                                                       
Query: 359 tctcaattttaatatttataattatgaaccaaattttacctgattatagttcccttgaat 418
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 559 tctcaattttaatatttctaattatgaaccaaatattacctgattatagttcccttgaat 618

                                                                       
Query: 419 tttaatgttttgaagctattaattttgtttaaagcatttatcaggttaacagttttatta 478
           ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct: 619 tttaatgttttgaagctattatttttgtttaaaacatttatcaggctaacagttttatta 678

                                                                       
Query: 479 ataattttatatcataggatttatttaatcaactaaactgattaacaatatatcattaca 538
           |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 ataaatttatatcataagatttatttaatcaactaagctgattaacaatatatcattaca 738

                                                                       
Query: 539 agtaccttaagaagtggatttaccaaagaaccatgtaacacatatttaaacctaagctgt 598
           ||||||||||||||||| ||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 739 agtaccttaagaagtggctttaccaaagaacaaagtaacatatatttaaacctaagctgt 798

                                                                       
Query: 599 aaaaatcacaattagatcaattctagcactacaaaatgtgtatagtaagttgcatcaaca 658
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 799 aaaaatcacaattagctcaattctagcactacaaaatgtgtatagtacgttgcatcaaca 858

                                                                 
Query: 659 gcttaggtatcttgcaactataagatattgagactattgttatatattgaagtt 712
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 859 gcttaggtatcttgcaactacaagatattgagactattgttaaatattgaagtt 912


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)