BAC Information

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BAC

Clone NameMSMg01-313J22
Chromosome6 (Build37)
Map Location 61,522,253 - 61,555,345
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313J22.T7 (MSMg01no313_j22.b1)MSMg01-313J22.TJ (MSMg01no313_j22.g1)
ACCAG435494AG435495
length1,2501,217
length of high quality
(start - end)
418 (40 - 457)376 (73 - 448)
definitionCHROMAT_FILE: MSMg01no313_j22.b1 PHD_FILE: MSMg01no313_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:31 2005CHROMAT_FILE: MSMg01no313_j22.g1 PHD_FILE: MSMg01no313_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,554,943 - 61,555,345)(61,522,253 - 61,522,625)
sequence
NNTTTGTNNNNNNGGTCACTGGGCGCTAAGACTCACTAAGGGAGAGGATC
CGCGGAATTCTCCATCACTGGAATCCTGAGTTTCTCATCCTTCTGTTCCT
CCTTGCGCCATATTTTCCCAGCATGTTCTCCGAACTACTAAGTTTTCAAT
CACTCATACCTATATCTTATGTTCAGGGTCTACTAATTAGGAATCTAACA
GATGCCACTCCTTGGATCTGGGTAGTATGACTGTTTTGATGGTCTAGTAC
CAAAGTTTGTTTGTGATATAGCACTAAATATATGAAGTAGCATAATATAT
ATGTTAAATGTTAGAAGTTGTAATTCAGTTTTACATAGATTGATGCATTT
CTTAAAATAATCATCTACATTTAATTCATATGTTCAGCAAGTGTATAGAA
AGCAACTTGATACCTGGAAAGTTTTAGTCCTTTAATCCCATCTCTGACCT
CCTGAATTTTTTGAAGCACTCAGAACTCCTGTTATTTTGTTTAAACATAC
CCGAAGAGTATTTGATTAGCTGTTCTCCACTTCATTTTTTTTAATTTTTG
TTCTTTTAAATTTATTTATTTAAATGTGTAATACCAAGAGAGAACGTACC
TTTAAGTTTAAATATATATATATATATATATATATATATATATATATATA
TATATATATTCAGAAGTTCCNATAATTAAACTATTGCAACTCCTTANAAA
CAAAATTCAGCACAAAAGAAGACAACATGACATTTCTAAATGGCTAAGCG
AATGTGCATTTCTTTCAGAATTCATTTGGCCTGAATAAGACTTTTACTCG
AATACTAGTGCTTAGGTTTGCCTTATACTTATGCACATTATTGTCCCAAA
CAATTTTTAGAGCATTTTTCGGATGGCAATATGAATGTATTTTCCGATAA
CTACTCAATTTTGAATTGCCTCCGATTTTGAAAGCACAATTGATTTTTAG
TGAGAACTTTTTTAAAATATTCCCTTGCCCCCTGCTATTTTTTTATTTAA
AGGGCTAATATTTTCTTCCGAGGGTGCCCTCTAAAAAGATTTACTCCTTC
CGCTCTTTTTGGGGGGCGTGGTGTTTTTTTCTCTTTTCCAACCCCCCTGC
AAGAAAAAAACCTCGGGTTCTTTAAATTTTTTCCCCCCGCCATATCTGCC
TATTATCTTCTCAGCACAGACCACAAAGCTTATACTTTTATTCCTCGCTG
TGTGATTTCCTCCCCCCCCTCCTCTCTCTCCCCTCGTTGTGGGCTCCTTT

NNNTTACAACATGGNAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCATGGTATTTGAAATATGTGATCTTCC
AAATAACCTTGTATGGAGCTAACATTTCCTGTACCATTTGAATATATATG
AACACCATTTTTGGTGTTTAAGTGTAATACTTAAAAATTTTTAATTTTAT
GTTGCTGTTATTATTGTTACTTTTTTTTTATGTACATGTATATATGTGTC
CCACAAGTGTGCATAGAGCCACCAGTGGCCAGAAGAGGGCATCATATTCT
CTGAAACCCAGTTCCTCAGAAAGCAACAGTTGCTGAACACTCTTTCTATG
CCTATAATGTAATTCTTGCTAACATGTTTTACCCAATATATTATTTTTTT
TGAAATGTTTTATATACAAATTACACTGAAAATATCAATTACATATTTTT
TTTTTTCCCCCCCCCCANANNCCCCCCTCCCCCCCAAAAAAAGAGGGGGG
GGACCNNCNNANNNNCNNNGCCNNNNANNGATTCTTACTCCTATTANCCA
TATAAATANACAACTAATCTGGCTTTGTGAATACTATTTGTTATGCTAGA
CTATAACTTGGAATTTCAATTGAATGCAATTCTTAGAGTAAGTCCAGTCC
TGAAATTAGCTACAACTTTCTGTTGCTGCAGATTGTCCTCCTGGTGGGAG
CATCTATGCATTGAGCAGTGGCTGTGGCTCTAGGCTAGAGTCAGTTTCAA
AAACCTGTGTTGTATCCCAGCCTGCAAATGCTGAATGCTCTCCAGCTGAC
TTTTCCGTGGNTACTAGAACCCAGACCCTGGATTAGGATAGTCTCTGAAT
GCTATTAAGTTTAACACCGCTGAATCCCCCCTCCCCCTGAAGACCCCTCC
TGAACCCAAAATTCCACCCTATATCCCCTTTTACTCAGTTTTCCCCCCCC
GCTTTCCCCCAGAAATCAAACTTGGCCCTTCTGGGTTTGAAGCTTCCCCA
CTTCCAGTCCCGGTTTTCTTAAGGAAGCCCAAAATAAATGGTGTACAGAA
CCCATTACCCCCTTGTACACAATCGACCATTTCCCTTAGTCTCATCCACT
CCCCTCCCTAAAAAATTTCCCGACTTATTCCCCATCCGCTAATCCCCCCC
CCCCTCAACCCACCCCCACACCTCTCTTCTACCTCTCACCAATTCTCTTT
CCCCTCCTTCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_j22.b1 MSMg01no313_j22.b1 CHROMAT_FILE:
MSMg01no313_j22.b1 PHD_FILE: MSMg01no313_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:31 2005
         (418 letters)



>mm_chr6_61554728_61555545
          Length = 818

 Score =  772 bits (399), Expect = 0.0
 Identities = 402/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctccatcactggaatcctgagtttctcatccttctgttcctccttgcgccatatt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaattctccatcactggaatcctgagtttctcatccttctgttcctccttgcgccatatt 559

                                                                       
Query: 76  ttcccagcatgttctccgaactactaagttttcaatcactcatacctatatcttatgttc 135
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcccagcatgttctcagaactactaagttttcaatcactcatacctatatcttatgttc 499

                                                                       
Query: 136 agggtctactaattaggaatctaacagatgccactccttggatctgggtagtatgactgt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agggtctactaattaggaatctaacagatgccactccttggatctgggtagtatgactgt 439

                                                                       
Query: 196 tttgatggtctagtaccaaagtttgtttgtgatatagcactaaatatatgaagtagcata 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgatggtctagtaccaaagtttgtttgtgatatagcactaaatatatgaagtagcata 379

                                                                       
Query: 256 atatatatgttaaatgttagaagttgtaattcagttttacatagattgatgcatttctta 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atatatatgttaaatgttagaagttgtaattcagttttacatagattgatgcatttctta 319

                                                                       
Query: 316 aaataatcatctacatttaattcatatgttcagcaagtgtatagaaagcaacttgatacc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaataatcatctacatttaattcatatgttcagcaagtgtatagaaagcaacttgatacc 259

                                                      
Query: 376 tggaaagttttagtcctttaatcccatctctgacctcctgaat 418
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tggaaagttttagtcctttaatcccatctctgacctcctgaat 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no313_j22.g1 MSMg01no313_j22.g1 CHROMAT_FILE:
MSMg01no313_j22.g1 PHD_FILE: MSMg01no313_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:31 2005
         (376 letters)



>mm_chr6_61522053_61522828
          Length = 776

 Score =  683 bits (353), Expect = 0.0
 Identities = 368/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatggtatttgaaatatgtgatcttccaaataaccttgtatggagctaacatttcctgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccatggtatttgaaatatgtgatcttccaaataaccttgtatggagctaatatttcctgt 260

                                                                       
Query: 61  accatttgaatatatatgaacaccatttttggtgtttaagtgtaatacttaaaaattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatttgaatatatatgaacaccatttttggtgtttaagtgtaatacttaaaaattttt 320

                                                                       
Query: 121 aattttatgttgctgttattattgttactttttttttatgtacatgtatatatgtgtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aattttatgttgctgttattattgttactttttttttatgtacatgtatgtatgtgtccc 380

                                                                       
Query: 181 acaagtgtgcatagagccaccagtggccagaagagggcatcatattctctgaaacccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 acaagtgtgcatagagccaccagtggccagaagagggcatcatatcctctgaaacccagt 440

                                                                       
Query: 241 tcctcagaaagcaacagttgctgaacactctttctatgcctataatgtaattcttgctaa 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctcagaaagcaacagttgctgaacactctttctatgcctataatgtaattcttgctaa 500

                                                                       
Query: 301 catgttttacccaatatattattttttttgaaatgttttatatacaaattacactgaaaa 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 catgttttacccaatatattatttattttgaaatgttttatatacaaattacactgaaaa 560

                        
Query: 361 tatcaattacata 373
           |||||||||||||
Sbjct: 561 tatcaattacata 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)