AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGGAGATGTCTTAACCACACAGAGTAAACCATCACTTAGAAC
CTTACCTTTGCTTTGTGTTAATACTAATGTGACAGACCAGAATCTTAGCC
ATATCCTAAACCAGGAAGACAAGAAAATATCATTTGCATAACATTTACTT
GATTTATTCTCAAAACACTATGTATAGAACTCTTGATGTATTTATTACTA
ATATTGTCATTTATGTTTTGGTGGTGAACATTGGTCCTTGAGACAACAGT
AAGTGAAGCCTTTTGCTTAGAATACTACATTCTCATAACTTGCTGAATGA
ATCTTTGAATTCTGTCGGTCTTACTATGATGATGTTTTATTAATACATGG
CAGAAGGCTTTAAATGCCCCCCACCAAGGGAGGAACATGAGTTACTGATG
TCTGTAGGAAAAAAATAGTGCTAGCTATAATGCTGAGTTGTAACACTGTG
TCTTCTAGGTAGAATTTTTTATTTTCTTCTGAAGGGAGGAAGAACATTTA
GAAGTACCATGAAAATCATAAGAAACGTTTAAAGCCCAGGAAGATCCTGA
AGCAGAAAACTCATAAAGCCTATCCAGAGGTCATTGATGTCAACCACAGC
TACTGGGGAAGGAGAAGACTCTAGTGGCGTTTCCCTAAAGTTACAGATAA
AATTCTAGTGATGC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCATGAAGCATATGTAGCTGGC
ATATTCTCTGGATGAGTTGTTGAGTGTGTGGCAGGAACTTAGACATCACT
ACTCCATACTTTAAAAATAGCCAACTTCATTAGCTATTCCTAAAAATTTC
CCTTTCTTTAAGATTTAGTTACTTTTACTCACTGATAAGTGGATATTAGC
CCAGAAACTTAGAATACCCTTTGTATTTTTTAAATGTATAAGTAGAAATA
ATGTTTTTAAACATAAAAATTTTGACATTCAAAAAGAAAAGATTTAGTTA
CTTTTACTATAATTATTATTTAGTATAAAAATTTAAACTTTGAACAGTTA
TAACAAGCTTTCACCCCCCATACACATTATAGAATTTGGCCAAATAGTTC
GTTTGCAACTTTATTCTACTTTTTTTTTACATTTAATAAATTAAATAATT
TTTGTTGGTTATCAAAGATAAAGCCACAAGCACTCATTGGGGTCCTGGCC
CAGCAACATTTGCAACCCCCAACTACTTTCCTCCCTTTTTCCTTGGGGTT
TGGGCCTTTAAGGGGAAAAAAGTAAGTCCCCGTGGGGCTTAAAAACCATG
GGGAGGGTTCTAACGGGGGGCGGGGGGGCGCCAAACCCCCGGGGGAATAA
AAAAAAA

Query= MSMg01no315_a09.b1 MSMg01no315_a09.b1 CHROMAT_FILE:
MSMg01no315_a09.b1 PHD_FILE: MSMg01no315_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:23 2005
         (371 letters)



>mm_chr6_105708403_105709173
          Length = 771

 Score =  700 bits (362), Expect = 0.0
 Identities = 365/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttggagatgtcttaaccacacagagtaaaccatcacttagaaccttacctttg 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttggagatgttttaaccacacagagtaaaccatcacttagaaccttacctttg 263

                                                                       
Query: 64  ctttgtgttaatactaatgtgacagaccagaatcttagccatatcctaaaccaggaagac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttgtgttaatactaatgtgacagaccagaatcttagccatatcctaaaccaggaagac 323

                                                                       
Query: 124 aagaaaatatcatttgcataacatttacttgatttattctcaaaacactatgtatagaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagaaaatatcatttgcataacatttacttgatttattctcaaaacactatgtatagaac 383

                                                                       
Query: 184 tcttgatgtatttattactaatattgtcatttatgttttggtggtgaacattggtccttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttgatgtatttattactaatattgtcatttatgttttggtggtgaacattggtccttg 443

                                                                       
Query: 244 agacaacagtaagtgaagccttttgcttagaatactacattctcataacttgctgaatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agacaacagtaagtgaagccttttgcttagaatactacattctcataacttgctgaatga 503

                                                                       
Query: 304 atctttgaattctgtcggtcttactatgatgatgttttattaatacatggcagaaggctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctttgaattctgtcggtcttactatgatgatgttttattaatacatggcagaaggctt 563

                 
Query: 364 taaatg 369
           ||||||
Sbjct: 564 taaatg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)