BAC Information

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BAC

Clone NameMSMg01-315P04
Chromosome6 (Build37)
Map Location 17,734,456 - 17,734,794
singlet/doubletsinglet
Overlap geneSt7
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315P04.T7 (MSMg01no315_p04.b1)MSMg01-315P04.TJ (MSMg01no315_p04.g1)
ACCAG436441AG436442
length729738
length of high quality
(start - end)
574 (41 - 614)344 (78 - 421)
definitionCHROMAT_FILE: MSMg01no315_p04.b1 PHD_FILE: MSMg01no315_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:34 2005CHROMAT_FILE: MSMg01no315_p04.g1 PHD_FILE: MSMg01no315_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACCTTGTTCGCCGAGCCTTAGGTCTAGTCAAATATTGGTTGGCAGTTTG
TAGGAGTTTCTGCAAAAGGTTTGTGGCTGGGTTGGTGTTTGCGTTTCTTA
TTTGATAACATGCAGAGTACTATCCTGTACAAATAATGCTAGAATGTAGG
TCTGAAGGCTCTGTGCAGGCACCAGTTCAATTTTCCCATGTTTGGTGAGT
TGTATAGGCATTTTCTTCAGCGTGGGACATTGCCATTGGTTTGTGGAGAG
CAACCTATAGTCTTGGTAACAGACTTGATTGTTTAGGCATTCCCATGGCC
AACAACTCAATTACAAGTAACCCAATTCCAGTATTAGAAGCTTTATTTGG
TGACAACAGATGGCCACCTGGGACTCTGTCTGCCCTGTCACATAAGTGGA
TGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGACGAGCT
AGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAAC
AACAATATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTACATAT
GTATCAAAAGATGGCCTACTCGGCCATCACTGGATAGAGAGGCCCATTGG
ACTTGCAAACTTGATATGCCCCAGTACAGGGGAACGCCAGCGTCAAAAAG
TGGGAGCGTGTGGGTTAGTGGAGTGTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCTTTTCTAGAACATTGA
TATATTTAACATTGCAAACTTTCTATGATAGTGCATATTTGTATAGCCTC
CTCAAAAGATAAAATTGCAATGGTTTATCGTATCATATTAAACTTAGGAG
GAAGTCAAGGTTGGAATAGGGCTATGGTTGTATGATAAAGATTTGTTTCC
TTTGTGAGAGGCTCTTGATTTGATCTCTAGCAAACACCACAAAACAAAGA
ACAAACGAAACTCACGAAAGCAAACGCTTATGCTCTCAGATCAGATAGAC
GCTGATTTGGGAATACCCGTGGGACGGTCCGTGCTCTAGTGTCTTCTCTT
CACCCCGGGGATACAATGTCACCGCCCGCTGTTTGTGCCATGCCTCAGAA
GGGGTTTTACCGACATTAATGTATATCGGTATTGTTTTAAAATAGCGGAT
ATAATAATTTTGAGAACATTAAATCCCTTTTTCAGTAAGTGCTTGGCTCC
CGTTCATTTCTTTACCAATAGCAGTATACCTATGAGAACATCATATGAAA
TGTACTTAAAGATGTTTTGGTTTGCCTAAAATTCTATCTAACTATCTTTG
ATAGTTTTGGTGGAATTTCACTTATAAGATGCTTCTATGTTGCAGTGAAG
ATGCCTTGCGAAATGATGTGCGTGTTTCCTGTATCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_p04.g1 MSMg01no315_p04.g1 CHROMAT_FILE:
MSMg01no315_p04.g1 PHD_FILE: MSMg01no315_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:34 2005
         (344 letters)



>mm_chr6_17734256_17734999
          Length = 744

 Score =  549 bits (284), Expect = e-161
 Identities = 326/340 (95%), Gaps = 2/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctccttttctagaacattgatatatttaacattgcaaactttctatgatagtgcata 60
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tttctccttttctagaacatagatatatttaacattgcaaacattctatgatagtgcata 260

                                                                       
Query: 61  tttgtatagcctcctcaaaagataaaattgcaatggtttatcgtatcatattaaacttag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tttgtatagcctcctcaaaagataaaattgcaatggtttatcatatcatattaaacttag 320

                                                                       
Query: 121 gaggaagtcaaggttggaatagggctatggttgtatgataaagatttgtttcctttgtga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 321 gaggaagtcaaggttggaatagggctatggttgtgtgataaagatttgtttcccttgtga 380

                                                                       
Query: 181 gaggctcttgatttgatctctagcaaacaccacaaaacaaagaacaaacgaaactcacga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 381 gaggctcttgatttgatctctagcaaacaccacaaaacaaagaacaaacgaaacccagga 440

                                                                       
Query: 241 aagcaaacgcttatgctctcagatcagatagacgctgatttgggaa-tacccgtgggacg 299
           |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct: 441 aagcaaacgcttatgctctcagatcagacagacactgatttgggaaatacccgtgggacg 500

                                                   
Query: 300 gtccgtgctctagtgtcttctcttcaccccggggatacaa 339
           |||  ||||||||||||||||||||||||  |||||||||
Sbjct: 501 gtca-tgctctagtgtcttctcttcacccaagggatacaa 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)