BAC Information

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BAC

Clone NameMSMg01-316D24
Chromosome6 (Build37)
Map Location 72,224,416 - 72,224,757
singlet/doubletsinglet
Overlap genenone
Upstream geneKrcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8
Downstream geneSftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316D24.T7 (MSMg01no316_d24.b1)MSMg01-316D24.TJ (MSMg01no316_d24.g1)
ACCAG436652AG436653
length738751
length of high quality
(start - end)
342 (77 - 418)303 (64 - 366)
definitionCHROMAT_FILE: MSMg01no316_d24.b1 PHD_FILE: MSMg01no316_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:57 2005CHROMAT_FILE: MSMg01no316_d24.g1 PHD_FILE: MSMg01no316_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCC
GCGGAATTCTTTCCCTATCTCAGGATTTCTCATCTTGGTATTGTTTCTGT
GGGGAAATCAATCCAGTTTTTATCTTTTCCACTTACACCACCTTTTCCTA
GAATATAACCTGCTATGAATTCGAACAATACCTGCTTTCTTTCTTTGCCT
TGCTTATGAATGTGCAAGTGTGGGTGTGAGAAAAGCCAGAGTTCCCTGGG
ACAGGGCAGGGCCCCAGGCTTGGAACAGCTTGGGAAGGGGGTGGGGGTGG
GCTGGGGTCAGTGCCCAATGTGGGTAGTTGGGCTATTCTGGCCCTCAGCG
GAGGGTGCTTTGCCCTACATCAGCACCACCAGAGTAAGCTGTGCTCTGGG
TGTGTGAGTACTGCTTCCACCCCCCCCACCTCCTGAATGCCTTGCTGAGG
TAGAATCCAGCTGACCTCCTGGGGCCTGCTGGCTTTGCAGACAGAAATGT
AACTGCTGTGGGTGAGCTGGTGCTCCTACAGAAGGCCTGGGCTTGGTTCC
CTGCACCCACATCGGGTAGCTTACAACTGCCTGTAACCCCAGTTCTAGCG
AATCTTGCGGCCCTTTTATGGCCTCTCTCAGGATTTGCACCCACATGGGG
GCCATGCCGACAACCAGTTTACCACCCAACCTGTATAGCACTTATTTCTA
AATAATGAATAGGATCCGAGTTGACTACACACTCCTCG
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATTTCTGGAATTCCAGGCCTACAGGCCTACATGTGT
CACCTGAAGTTTATGCAAAGAGCAACACCTATTTAGCCACAAGAGGTGTG
TAGTGTTCCCACCAGAACTAGGTGGTAAGACCTTATGCTGAAGACACAGC
ATGCTCTGACTGCAGGGCGTACTGAAATCAAGCTGGCATTGAACCGGAAG
TTGCTTCCTTGCTGGCTAGCCCGTATCACTCTGGAAAGCACTATGATGGC
TGCTGAGGGAGAAATGGCATCAGCATTGTTACTCACCTGTGGACCGGGGA
ACCACACTCCTGACCCGTTTTTTTCCCCCCCCCTCTGGTGCAGTAGTGGG
GCGACCAGCTGCTTTCTTATCCCCCCCAGGAATGACACATAGAAAACTCA
TGTCTGCTATGGTAACCCTGGTCACAAGCGCATGGCATGCTCTGTAGAGG
GGAAGCTGCTATTGTCTGTTAAGTAGGTGTGGTGCCCCTGTCATAGTGTT
TTCTAATGAGTCTCTGTTTATGTGCCTACGTTATGATTGTTCTCATCTTA
TCTTCTCCTTTGCCGCTGTTTCTACTCGTTCTCTTTTAACTAGATTTTTT
GTCCTTGTTATCTTTTTCACTCTTGTTTTGCCTCTCTCCATATACTTGGC
TTTTTTCCCCCCCCTTCCCTTTTCGTGTTATCCCTCCCCCCTTCTCCCCA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_d24.b1 MSMg01no316_d24.b1 CHROMAT_FILE:
MSMg01no316_d24.b1 PHD_FILE: MSMg01no316_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:57 2005
         (342 letters)



>mm_chr6_72224216_72224957
          Length = 742

 Score =  615 bits (318), Expect = e-180
 Identities = 336/342 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcatcttggtattgtttctgtggggaaatcaatccagtttttatcttttccacttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcatcttggtattgtttctgtggggaaatcaatccagtttttatcttttccacttac 260

                                                                       
Query: 61  accaccttttcctagaatataacctgctatgaattcgaacaatacctgctttctttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaccttttcctagaatataacctgctatgaattcgaacaatacctgctttctttcttt 320

                                                                       
Query: 121 gccttgcttatgaatgtgcaagtgtgggtgtgagaaaagccagagttccctgggacaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttgcttatgaatgtgcaagtgtgggtgtgagaaaagccagagttccctgggacaggg 380

                                                                       
Query: 181 cagggccccaggcttggaacagcttgggaagggggtgggggtgggctggggtcagtgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggccccaggcttggaacagcttgggaagggggtgggggtgggctggggtcagtgccc 440

                                                                       
Query: 241 aatgtgggtagttgggctattctggccctcagcggagggtgctttgccctacatcagcac 300
           |||||||| || |||||||||||| ||||||||||||||||| | ||||| |||||||||
Sbjct: 441 aatgtggggagctgggctattctgaccctcagcggagggtgcctcgcccttcatcagcac 500

                                                     
Query: 301 caccagagtaagctgtgctctgggtgtgtgagtactgcttcc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccagagtaagctgtgctctgggtgtgtgagtactgcttcc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)