BAC Information

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BAC

Clone NameMSMg01-317A05
Chromosome6 (Build37)
Map Location 50,170,079 - 50,170,238
singlet/doubletsinglet
Overlap geneDfna5h
Upstream geneTra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6
Downstream geneLOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317A05.T7 (MSMg01no317_a05.b1)MSMg01-317A05.TJ (MSMg01no317_a05.g1)
ACCAG437201AG437202
length1,120883
length of high quality
(start - end)
---163 (75 - 237)
definitionCHROMAT_FILE: MSMg01no317_a05.b1 PHD_FILE: MSMg01no317_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:56 2005CHROMAT_FILE: MSMg01no317_a05.g1 PHD_FILE: MSMg01no317_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGGGGGCTNNNNNNNNNNNNNNNNTTNNTTTTTTTTNNNTNNTNCTTT
TTTNTTTTTTTTTTTNTNNNNTTTNNTNNTNTTTTTTTTTTTTTTTTTTC
TCTTCTCTCCTCTCCCTTTTTTCCTTTTTTTTTTTTTTTTCTTTTTTCTT
TNTCTTCCCTTTCCCTCCTCTTCTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTCTTCTTTTTTTCTCTCCTCTTCTTCTTTCTTCTCTTCTTTTT
TTNCTTTTTTTTCCTCTTTTTTTTCTTTTTTTTTTCTTTTNTCCCNTTTT
TCTCCCTNTTTTTTTCTCTCTTTTTCTTNTTTCTTTCTTTCCTCTCCCNN
NTNTTTTTTTCTNCTTTCTTNNTTTTTTTTTTCCCCCCTCTTTTTCCCTC
TTTCCCCTCCTCTCTCTTCCTCCTTTTTTNNNNNTTNTTCTCCTCTTTTA
AATTAAAAATAATTTTTGGGGCCGTGGGTCCCCGCCCCCTTTNAATTTAC
CNNAAAACNTNCCANCNTAAANTTANGGTGGCCAGANCGCGACCTGCAGA
NNCNNGGGNNAAATTTTCNTGGGNTGNNAAAATAAGGTGCTCCCACGGAC
AGGAAAAAAGGTGGNACCTTTAANNAACTTGGTTTTATTGGTTTNCCCTA
AAAAGGCCTTGTTCCCTGGGAAAATGGGGAATTTTTTTAAAATTTCACCC
CCTGGAGAGGGGCCCTTTAACCTTTTTTTAAAGCCTTTTAATATTTGGGG
GCTTATAAGGGTTAAGGGGGCCCCCCCGGGGGNTATTGGGCCCACGGGGG
GGGCCCTCCCCCCCTGGGGGGAGAAGAGGGGCGCCCACAAAATAGGGGGG
TGCTCTCCCCCACGGGGTGCCTTCCCCCCACGTGTGTGGGGCCTCGGGGG
GCTCTCTCACCCTGGGGGGCCTCCCTGCGGGGTNAAAACCCCCCCCCCGT
GAAAATTGGGGGGTNTTAGTGTGGGATACAGGGGGGGGTTCTTTCCCCCC
CCCTCTCTTTCTTCTCCGTGGGGAGGCGCCCTCTTTTGTGGGTGGGGGTG
GTGGTTGGGGGGCCACACAAGGGAGGGGGAGGGGGGGNTCTTTNTNTTNC
CTCCAGCCNCCCCCTCCCCN
TGAAGTGGGAGGCCTGGCGGCCGCCTGTTTTCTGACTAGAGGTGACCTAT
AGAATGTTCCGACAAAATCGGAACATCTGCGTTCTTTCTTGGGTCAAGCC
CTGCATCCTCCAGACCGCAAACTAGAACCTCTGGACAACTGTAATCCTGT
CGCTGGTTGCTAGGCTCTCGCAATTTCATTTCAAGTGGCAAGATGATGTG
AGTGTTTTTTCTGGACACCTAAAGCATTTGAGCAAGTATTGGCACATTTT
TTCATGGTTTAACAAAGCCTTTTTATTCCCTCTTATACAACTTTCCTTTT
CCCTCTTCACCTCCCTATTTTATCCCTCCTTCTTTTTTTACTTTTACCCC
CCTCCTTTTATCCCTCACTTCCTATTACAATTTTCTACATAATAATTCCA
CTACCCCCCCTTTTATTTTATATTTTTCATCCTTTTTTATTCTCTATTTT
TCTTTGTCCCCTCTTTTTTTTATCTCTCCCCTTCTCTCCTCCTTATCTTA
TTTTCCCTACCCATCCATTAACTAATTTCTTCTTTTCTTTCTCCCCTCCC
TCCCCTTTTTTATTTTTCTCTTCTCCCCCCTCTTTATCTCTCCCTTCTTT
CTCTCCTTCATCTTTTTCGTTCCACGCTTTTTTGTCAAACCTATATAACA
TCTCTTCACATCTACTGCTAACATTTTCGTTCTTATTATTTTAACTCATT
ACTTTCTTCTCACCTACTTATTTACCTACACTATTTTTTATCTTCATATT
TTTTGTTCACACATCTTATTATAATAATAATCATTTTCCACCCCGCCTCT
ACTTCTCATCCTTTTTTTTATCCATCAACATCCATGACCTCTAAGCTCAC
TCTCGTCCCTCATCTCTTTTCTCTCCTATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_a05.g1 MSMg01no317_a05.g1 CHROMAT_FILE:
MSMg01no317_a05.g1 PHD_FILE: MSMg01no317_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:56 2005
         (163 letters)



>mm_chr6_50169879_50170441
          Length = 563

 Score =  279 bits (144), Expect = 8e-80
 Identities = 156/160 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgcgttctttcttgggtcaagccctgcatcctccagaccgcaaactagaacctctgg 60
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 201 atctgcgttctttcttgggtcaagccctgcatcctccagaaggcaaactagaacctctgg 260

                                                                       
Query: 61  acaactgtaatcctgtcgctggttgctaggctctcgcaatttcatttcaagtggcaagat 120
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 acaactgtaatcctgtccctggttgctaggctctcgcaatttcatttcaagtgggaagat 320

                                                   
Query: 121 gatgtgagtgttttttctggacacctaaagcatttgagca 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtgagtgttttttctggacacctaaagcatttgagca 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)