Query= MSMg01no317_p09.b1 MSMg01no317_p09.b1 CHROMAT_FILE:
MSMg01no317_p09.b1 PHD_FILE: MSMg01no317_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:02 2005
(663 letters)
>mm_chr6_148979127_148980192
Length = 1066
Score = 1102 bits (570), Expect = 0.0
Identities = 645/682 (94%), Gaps = 23/682 (3%)
Strand = Plus / Plus
Query: 1 gtttcttcagcacctatgtgtacttatctgttttaaactttattcaaagaaaaacaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gtttcttcagcacctatgtgtacttatctgttttaaactttattcaaagaaaa--aaaag 258
Query: 61 tgtgtgtgtgt-----gggggggaggaattgagattgagacattatcaatagagcattta 115
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtgtgtgtgtgtgtgggggggga-gaattgagattgagacattatcaatagagcattta 317
Query: 116 aatgtagtagtgggcatagatacatacttaaagttaattttcaagtaagtaaatgtagga 175
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 318 aatgtagtagtgggcatagatacatactgaaagttaattttcaagtaagtaaatgtagga 377
Query: 176 aataaaatcagtttcag-aaagaaaaaatcaatctgagctacaaggcagcgtccctatat 234
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aataaaatcagtttcagaaaaaaaaaaatcaatctgagctacaaggcagcgtccctatat 437
Query: 235 gagaattatagttcatttggggacaggatcaaaagctagatacaaagattggtaaaaata 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagaattatagttcatttggggacaggatcaaaagctagatacaaagattggtaaaaata 497
Query: 295 aatttttaatgtttaaagagttttcccactgggaatgtagctcaattagagtgcttggcc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatttttaatgtttaaagagttttcccactgggaatgtagctcaattagagtgcttggtt 557
Query: 355 acctacaaaatccttatttgagccccagcaccaaataaaaaccaggtgtggtggggttgg 414
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 558 agctacaaaatccttatttgagccccagcaccaaataaaacccaggtgtggtggggttgg 617
Query: 415 tgagacagctcactcagtggtgctgagtgtacactgattttacagaggacttcagttggt 474
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 618 tgagacagctcactcagaggtgctgagtatacactgattttacagaggacttcagttggt 677
Query: 475 tctcagcacccactttggacagttcacaatgcctgtaactacagctataagagatttcaa 534
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 tctcagcacccactttggacagttcacaatgcctgtaactacagctgtaagagatttcaa 737
Query: 535 gctctcttctggcctctgagggcactgtatccatgtgccatacacagacagacagacaga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gctctcttctggcctctgagggcactgtatccatgtgccatacacagacagacagacaga 797
Query: 595 cagacagacagacagacagacacacacaca--------------gcacccaaaacagctg 640
|| ||| ||| ||| ||| ||||||||||| ||||||||||||||||
Sbjct: 798 cacacacacacacacacacacacacacacacacacacacacacagcacccaaaacagctg 857
Query: 641 ggtgaggtggtgtacaccttta 662
||||||||||||||||||||||
Sbjct: 858 ggtgaggtggtgtacaccttta 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1066
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1056
Effective search space: 689568
Effective search space used: 689568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_p09.g1 MSMg01no317_p09.g1 CHROMAT_FILE:
MSMg01no317_p09.g1 PHD_FILE: MSMg01no317_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:02 2005
(656 letters)
>mm_chr6_149141089_149142144
Length = 1056
Score = 1176 bits (608), Expect = 0.0
Identities = 650/676 (96%), Gaps = 20/676 (2%)
Strand = Plus / Minus
Query: 1 actcctctagggactagttc-----tttttttttttttttaaaga--------------- 40
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 883 actcctctagggactagttcctttttttttttttttttttaaagacttatttattatatg 824
Query: 41 taagcacactgtagctgtcctcagatactccagaagagggcatcagatttcattatggat 100
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 taagtacactgtagctgtcctcagatactccagaagagggcatcagatttcattatggat 764
Query: 101 ggttgtgagccaccatgtggttgctgggatttgaacttgggacctttggaagaacagtcg 160
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 763 ggttgtgagccaccatgtggttgctgggatttgaacttgggaccttcggaagaacagtcg 704
Query: 161 gcgctcttaaccactgagccatctcgccagcccctaggtactagttctaatcatgctttt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gcgctcttaaccactgagccatctcgccagcccctaggtactagttctaatcatgctttt 644
Query: 221 acttgtctaatggaagtgtggaccactgaagcctcagcacccaacccagtcctgtggtct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acttgtctaatggaagtgtggaccactgaagcctcagcacccaacccagtcctgtggtct 584
Query: 281 caatatttaataaaatggcgttagtatgtggttgtgccctaaaatcaaacctcactatca 340
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 583 caatatttaataaaatggtgttagtatgtggttgtgccctaaaatcaaacttcactatca 524
Query: 341 ccaaaacaaaaagtgtgtactgaggagcatattgaagagaaggctgtaattggttgagag 400
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caaaaacaaaaagtgtgtactgaggagcatattgaagagaaggctgtaattggttgagag 464
Query: 401 agccccaacttgtcttagaacttcccacagggccttacaaaaggtccctgagtccccctc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agccccaacttgtcttagaacttcccacagggccttacaaaaggtccctgagtccccctc 404
Query: 461 catgcccagccaattaatgtaaaggtcaccagaaccaccaatcattacgtgcctagttac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catgcccagccaattaatgtaaaggtcaccagaaccaccaatcattacgtgcctagttac 344
Query: 521 tgttgttataatctgcactcaaaaactatataaaagacttatgaacgaaaaaaaggggtc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgttgttataatctgcactcaaaaactatataaaagacttatgaacgaaaaaaaggggtc 284
Query: 581 acctttcctctgggtgcaggaccaccccagcacactagaaaaataaacctcttgcttttt 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 283 acctttcctctgggtgcaggaccaccccagcacactagaaaaataaacctcttgtttttt 224
Query: 641 catcaaactttgttct 656
||||||||||||||||
Sbjct: 223 catcaaactttgttct 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
