BAC Information

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BAC

Clone NameMSMg01-318J06
Chromosome6 (Build37)
Map Location 107,428,324 - 107,428,576
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318J06.T7 (MSMg01no318_j06.b1)MSMg01-318J06.TJ (MSMg01no318_j06.g1)
ACCAG438340AG438341
length758746
length of high quality
(start - end)
254 (159 - 412)348 (77 - 424)
definitionCHROMAT_FILE: MSMg01no318_j06.b1 PHD_FILE: MSMg01no318_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:47 2005CHROMAT_FILE: MSMg01no318_j06.g1 PHD_FILE: MSMg01no318_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAAAG
CGGAATTCACTTGCTGTATCTCACCTTGTGATGTCCTCTGCCAGGTATGA
TATAATGAGAAGCTTCACATGGGACACCACAAAAAAAAAAAAAAAGAAAA
GAAAAGAAAAAAAAAAGCCAGCACCTGATCTTGAACCTCTCAGCCTCCAA
AGTAGAGAGCTCAATAAACTTATGTGCTTTATAAATCACCTGAGGACAGT
AGATATACCTTCTCACACATCTTTCCGACTATCCTCATTAGACTCACTTC
TTTCAGATCCATATTTTCATCCCAGAATTGGTATTATATCTTCCAGAAGT
GCAGAGGAGAGGGAACCTGTACTACCTCTCTCATGAGGAGAGTGTGTTCC
AATTACTGCAGACAGAGGCTGCCTCACCCCCCCCGCCACACCGCTCTGAG
ACCATATTAAACCGACAGGTAATTAAAACTCACTCCTTCCCCATCTGTTT
CTTCATCATATTCTCTCTCTTAAATTTCATCTTGTTATACATGGCCCATG
GTATTAATCTGCCAGGATAATTTTAGAAACTATCTACTCTCCAAAAAAGT
AAGTTGATCCACTCTGTTTGATGGGATTTGTGAATTTGACAAAATTGTAA
TTAATTTCAAACATTCTACCAAAATTCATTACCTGTTAATTGAAGTAACT
TTATTCCGGGGTTAAGCCTCCGGAGAAGGATAGAAAAATATTCGATTCTA
TTATTCTT
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCCCCATTCTAGAAAGCCATTAAATCATCTAA
ATAGTATTAATTTATGAAAGCTCGTCTTCATGTTGATCTGCAGGAAATTT
GCCCAGTAGGATGAGCTGATGCCCAGGAATTATTAGGCTATGTAATAGTG
TCAGGAAAGGAATATCTGTATTGAGGCACAATCCTGGGATGAAGTCTCTG
GGGTTGTGCCTCTTCAGAGTACACCTATCACAGCCATGCAAAGCAGTGGG
CTATCTCTACAAAGTTCATTTGCTTGCCATATTCTTTTCTAAATGGCTCC
TGTCATGACAAGTCTAAGAGAATCTGCACAGAGACTTGATATCACCCCCC
TCCAACAGATAGGAAGTTGTCTCTCCCCCCCCTCATAGGGGTCAGGTATT
AAATCAAACACTGATAAAGATGCTCAGTGAATACCTGTAGACCTGATGTT
TGTAGTGACATATTACTTCTGAATGTATGGAGGACATTTCTTCAACAGTT
TCCTTTAAGTCCTGTAATGTCACTACAGATTATCTCTCTCCTTGCTTCAG
CCGGCAGGTAATTTCGTTTGATGTCTATTAGGCTCTAATTCAAATATAAT
GTCCATAATTCAATGAGAGGAGATAGCCAAAGGATCCCCTTTTTTTTAAA
AGGTAAACTTCCTTGTTATCACAGTGCTGCCCGAATTATAGCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_j06.b1 MSMg01no318_j06.b1 CHROMAT_FILE:
MSMg01no318_j06.b1 PHD_FILE: MSMg01no318_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:47 2005
         (254 letters)



>mm_chr6_107428124_107428776
          Length = 653

 Score =  453 bits (234), Expect = e-132
 Identities = 249/254 (98%), Gaps = 1/254 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaagccagcacctgatcttgaacctctcagcctccaaagtagagagctcaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaagccagcacctgatcttgaacctctcagcctccaaagtagagagctcaataaa 260

                                                                       
Query: 61  cttatgtgctttataaatcacctgaggacagtagatataccttctcacacatctttccga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatgtgctttataaatcacctgaggacagtagatataccttctcacacatctttccga 320

                                                                       
Query: 121 ctatcctcattagactcacttctttcagatccatattttcatcccagaattggtattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |
Sbjct: 321 ctatcctcattagactcacttctttcagatccatattttcatcccagaattgggagca-a 379

                                                                       
Query: 181 tcttccagaagtgcagaggagagggaacctgtactacctctctcatgaggagagtgtgtt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcttccaggagtgcagaggagagggaacctgtactacctctctcatgaggagagtgtgtt 439

                         
Query: 241 ccaattactgcaga 254
           ||||||||||||||
Sbjct: 440 ccaattactgcaga 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 653
Length adjustment: 9
Effective length of query: 245
Effective length of database: 644
Effective search space:   157780
Effective search space used:   157780
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)