BAC Information

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BAC

Clone NameMSMg01-321H20
Chromosome6 (Build37)
Map Location 60,659,999 - 60,660,336
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
Downstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321H20.T7 (MSMg01no321_h20.b1)MSMg01-321H20.TJ (MSMg01no321_h20.g1)
ACCAG440444AG440445
length778737
length of high quality
(start - end)
345 (72 - 416)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no321_h20.b1 PHD_FILE: MSMg01no321_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:14 2005CHROMAT_FILE: MSMg01no321_h20.g1 PHD_FILE: MSMg01no321_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGATCCGCGGAA
TTCTTTGTACTTTTCACGTAGCTTTCAGATGAAGGACCATGGACCAGCAG
AGTCTGAACAGTAGCTGGGAAGCACAAATGTCAGTGAAGAGAGGGATGCT
TTGCTGTCAGGCACACTGGTGAATGGCATGTGTGCAGACAGCAGGGTTGT
TTCACAAACAGCATCTCTCTTGTCCTTTCTTCCTTTGGGGGAGAATAACG
TACTTGAAACCTTTGAGCCTCTATGGAGGGATACAACAAGCCTCAGTGAC
ACCCCCTCTGTAGAAGTGTGCTATCCTGTCTTAAGGGGAATTGCACAAGA
AAGGAAGAGCAGGATTTTCTGTGAGCTTACATAAGGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTTTCCCCCCCCCCCCAAAAAAATAAAAAAATAANTTA
TAATATTAATACATTTTATTTATAATCTTGTATTTTTTTTAATTTTTTCC
CCCCTTACTTTAATCAACCTCATCCTTTTTTTATATCTCATCTTTCATTT
AACCTCCACTACCACTTAACCGAATACCTTATTCCTTTTATTTTTTAAAC
ATCACAACGTTCACCATAACATTTATTTACACTCTTATAGCATTTTCTTG
TCTTTTATGTTTTTCTCGTCCTTTTTTCTTCTTTTTTTTTGTATCCCTTC
CTTTAATTTCTCCTCTCCTCCCACATTCCCACTTTTTTTTATCGTATTCT
CCCCTCTACTCTTCTTCTTTTTTATTTT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATATAGAGGAAGCCTACAGATTATT
TTGAGTTAATTTTATATCCAGATACTTCACTAAAGCTGTTTATCAGGTAC
AGGAGTTCTCTGGTGGAATTTTGGGGGTCACTTATATATACTATCATGTC
ATTTGCAATTAGTGATATTTTCACTTCTTCCTTTCCAATTTGTATCCCCT
TAATCTCCTTTTGTTGTCTAATTGCTCTGAATGGGACCTCAAGTACTGTA
CTGAATAGGTAGGGACAGAGTGGGCAGCCTTGTCAAGTCTCTGATTTTAC
TGGCATTGTTTCAAGTTTCTCTCCATTTAGTGTGATATTGGCTATTAGTT
TGCTATATATAGCTTCCCACCCACGCTTAGATATGGGCCTTGAATTCCTG
ATCTTTACAAGACATTTATCATGAATGGGTGTTGGACTTTATCGAATGCT
TTCTTAGCATGTAATGTGTATTGGACTTTTCAATTGCTTTCTCAGCATCT
AATGAGATGATCATTTGGTTTTTGTCTTTGAGGTTGTTTATATAGTGGAT
TATGTTCATAAATTTCTGTATATTGAACCATCACTCCATCCCTGGGATGA
AGCCTGCTTGATCATAATGGATGATTTTTTTGATGTGTTCTTGGATTCAG
TTTGCAGGAATTTTACTGAGGATTTTTGCATCAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_h20.b1 MSMg01no321_h20.b1 CHROMAT_FILE:
MSMg01no321_h20.b1 PHD_FILE: MSMg01no321_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:14 2005
         (345 letters)



>mm_chr6_60659822_60660567
          Length = 746

 Score =  600 bits (310), Expect = e-176
 Identities = 331/338 (97%), Gaps = 1/338 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcagatgaaggaccatggaccagcagagtctgaacagtagctgggaagcacaaatgt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctttcagaggaaggaccatggaccagcagagtctgaacagtagctgggaagcacaaatgt 456

                                                                       
Query: 61  cagtgaagagagggatgctttgctgtcaggcacactggtgaatggcatgtgtgcagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cagtgaagagagggatgctttgctgtcaggcacactggtgaatggcatgtgtgcagacag 396

                                                                       
Query: 121 cagggttgtttcacaaacagcatctctcttgtcctttcttcctttgggggagaataacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagggttgtttcacaaacagcatctctcttgtcctttcttcctttgggggagaataacgt 336

                                                                       
Query: 181 acttgaaacctttgagcctctatggagggatacaa-caagcctcagtgacaccccctctg 239
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 335 acttgaaacctctgagcctctatggagggatacaaacaagcctcagtgacatcccctctg 276

                                                                       
Query: 240 tagaagtgtgctatcctgtcttaaggggaattgcacaagaaaggaagagcaggattttct 299
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 275 tagaagtgtgctatcctgtcttgaggggaattgcacaagaaagaaagagcaggattttct 216

                                                 
Query: 300 gtgagcttacataaggtgtgtgtgtgtgtgtgtgtgtg 337
           ||||||||| ||||||||||||||||||||||||||||
Sbjct: 215 gtgagcttagataaggtgtgtgtgtgtgtgtgtgtgtg 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space:   247632
Effective search space used:   247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)