BAC Information

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BAC

Clone NameMSMg01-321P17
Chromosome6 (Build37)
Map Location 36,016,791 - 36,064,334
singlet/doubletdoublet
Overlap genenone
Upstream geneCnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321P17.T7 (MSMg01no321_p17.b1)MSMg01-321P17.TJ (MSMg01no321_p17.g1)
ACCAG440805AG440806
length730733
length of high quality
(start - end)		683 (48 - 730)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no321_p17.b1 PHD_FILE: MSMg01no321_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:50 2005CHROMAT_FILE: MSMg01no321_p17.g1 PHD_FILE: MSMg01no321_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,016,791 - 36,017,470)(36,063,678 - 36,064,334)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAATGTGTTCTCCAACTTCAATAAAACAGGCTTGGTTTTCAT
AGTTATACTTTGATATTTTTGTACCTGCCAACTCACAGAAGCAAAATTTA
CTATACATGATACTCATTGGTTCTTCTCCTATGACCTAATTGCTAAGTGT
CTTTTGGCATTTAATTAAAAACTGAAGGTGCACGTTTAGTGTTTACAGAT
GATTTATATGTGAAAGCACTCAATATCTTTGGTTTAAAATTTGTGTTTCA
TAAAGAACAGTTAAGCCATTTCCTCACATAATTCCTTTTAAAGTGAATGA
ATGACGGAAGAAACCACTTTTCTGTTCCTATATTAAAAAGTTTTACAAAT
GCAAATGGAAAACATTTGGGTTAACATGGAGATTGGTATAGGTCGCTGTT
CTGTATAGAAATTTATGTGTTTGGAAGGAAATTCCCCACCCAAGGAAAAG
ATTAGAAGTAGAAGCCAAGCAAATCAAGACTTGACCTTTGATTCTCACTG
TTTAATGTTTGTAAAAGTTCTGAAGATCACTTAATTCCTTCATGCTTTCT
CATTTTTAAAATAGAAGAAGCAATGAAACACAGGCAGTCTTTGTGCTAAT
TAGCAACGATGCAACTACCTTAGTATATGATATTGTTGTAACAAAATAAT
TGATGCTAGATAATTTATAATGAAAACAAA

CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATCTAGGGACCAGAGGGGAAAC
TTCTAGGGAGATTCATGTGAGAGTCAGAGGAAGAACATAAAGGCATCACG
GTGATCACACACCCGCAAGAGAATCCCAAAGTGAATAGGCAATGGAAGAC
CAATTTATGAATAAGTGATCTTGGGGAAGACAAACTAGCAATGGGGACAA
AATTCAAATGAACAGCATGAGCCAGATCAAAGGGAAAGCTATTACAATGG
AAGCACATGCCACCAAATGTTCAGAAATATAAATATGAGAAGGCATTTCC
TAGTTATCAGGACAAAACCGGCAGGATATTCCTAATAAAAAGGAAGCAAA
CAAAGCAGGCCTCTGGATCTCATTTGCCCAGGAAATTCACAGGACTCAAA
GTGCACCCACACAGCCCAGATTTTATTCCAGCTGGAAGACATTTTGTATA
CGATGGAAGACATTGACTTTAAACAAACAAGTAGGGGGGAAGCATCCAGG
AAATAAAGCAATAATGATTCCTTCATTTACACCCACTTGAAGATAGAAAA
TCCACAAACATAATGTAGAACTAAAGTAAGTTGATTCTAATTGGTTGTGT
GATTAAATTGCAGAAAGGTCTGGCAAAGAGAACCACATGTAGATAAATAG
ACGAATAGGGAAGTTAATAACATTACACATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_p17.b1 MSMg01no321_p17.b1 CHROMAT_FILE:
MSMg01no321_p17.b1 PHD_FILE: MSMg01no321_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:50 2005
         (683 letters)



>mm_chr6_36016588_36017670
          Length = 1083

 Score = 1268 bits (656), Expect = 0.0
 Identities = 674/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaatgtgttctccaacttcaataaaacaggcttggttttcatagttatactt 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcagaatgtgttctccaacttcaataaaacaggcttggttttcatggttatactt 263

                                                                       
Query: 64  tgatatttttgtacctgccaactcacagaagcaaaatttactatacatgatactcattgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgatatttttgtacctgccaactcacagaagcaaaatttactatacatgatactcattgg 323

                                                                       
Query: 124 ttcttctcctatgacctaattgctaagtgtcttttggcatttaattaaaaactgaaggtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcttctcctatgacctaattgctaagtgtcttttggcatttaattaaaaactgaaggtg 383

                                                                       
Query: 184 cacgtttagtgtttacagatgatttatatgtgaaagcactcaatatctttggtttaaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacgtttagtgtttacagatgatttatatgtgaaagcactcaatatctttggtttaaaat 443

                                                                       
Query: 244 ttgtgtttcataaagaacagttaagccatttcctcacataattccttttaaagtgaatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtgtttcataaagaacagttaagccatttcctcacataattccttttaaagtgaatga 503

                                                                       
Query: 304 atgacggaagaaaccacttttctgttcctatattaaaaagttttacaaatgcaaatggaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgacggaagaaaccacttttctgttcctatattaaaaagttttacaaatgcaaatggaa 563

                                                                       
Query: 364 aacatttgggttaacatggagattggtataggtcgctgttctgtatagaaatttatgtgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacatttgggttaacatggagattggtataggtcgctgttctgtatagaaatttatgtgt 623

                                                                       
Query: 424 ttggaaggaaattccccacccaaggaaaagattagaagtagaagccaagcaaatcaagac 483
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| 
Sbjct: 624 ttggaaggaaattccccacccaagaaaaagattagaagtagaagccaaggaaatcaagat 683

                                                                       
Query: 484 ttgacctttgattctcactgtttaatgtttgtaaaagttctgaagatcacttaattcctt 543
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttggcctttgattctcactgtttaatgtttgtaaaagttctgaagatcacttaattcctt 743

                                                                       
Query: 544 catgctttctcatttttaaaatagaagaagcaatgaaacacaggcagtctttgtgctaat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 catgctttctcatttttaaaatagaagaagcaatgaaacacaggcagtctttgtgctaat 803

                                                                       
Query: 604 tagcaacgatgcaactaccttagtatatgatattgttgtaacaaaataattgatgctaga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tagcaacgatgcaactaccttagtatatgatattgttgtaacaaaataattgatgctaga 863

                               
Query: 664 taatttataatgaaaacaaa 683
           |||| |||||||||||||||
Sbjct: 864 taatctataatgaaaacaaa 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no321_p17.g1 MSMg01no321_p17.g1 CHROMAT_FILE:
MSMg01no321_p17.g1 PHD_FILE: MSMg01no321_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:50 2005
         (657 letters)



>mm_chr6_36063478_36064534
          Length = 1057

 Score = 1232 bits (637), Expect = 0.0
 Identities = 652/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatctagggaccagaggggaaacttctagggagattcatgtgagagtcagaggaagaac 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctatctagggaccagaggagaaacttctagggagattcatgtgagagtcagaggaagaac 798

                                                                       
Query: 61  ataaaggcatcacggtgatcacacacccgcaagagaatcccaaagtgaataggcaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ataaaggcatcacggtgatcacacacccgcaagagaatcccaaagtgaataggcaatgga 738

                                                                       
Query: 121 agaccaatttatgaataagtgatcttggggaagacaaactagcaatggggacaaaattca 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 737 agaccaatttatgaataagtgatcttgaggaagacaaactagcaatggggacaaaattca 678

                                                                       
Query: 181 aatgaacagcatgagccagatcaaagggaaagctattacaatggaagcacatgccaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aatgaacagcatgagccagatcaaagggaaagctattacaatggaagcacatgccaccaa 618

                                                                       
Query: 241 atgttcagaaatataaatatgagaaggcatttcctagttatcaggacaaaaccggcagga 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgtacagaaatataaatatgagaaggcatttcctagttatcaggacaaaaccggcagga 558

                                                                       
Query: 301 tattcctaataaaaaggaagcaaacaaagcaggcctctggatctcatttgcccaggaaat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 557 tattcctaataaaaaggaagcaaacaaagcaggcctctggatttcatttgcccaggaaat 498

                                                                       
Query: 361 tcacaggactcaaagtgcacccacacagcccagattttattccagctggaagacattttg 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcgcaggactcaaagtgcacccacacagcccagattttattccagctggaagacattttg 438

                                                                       
Query: 421 tatacgatggaagacattgactttaaacaaacaagtaggggggaagcatccaggaaataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatacgatggaagacattgactttaaacaaacaagtaggggggaagcatccaggaaataa 378

                                                                       
Query: 481 agcaataatgattccttcatttacacccacttgaagatagaaaatccacaaacataatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agcaataatgattccttcatttacacccacttgaagatagaaaatccacaaacataatgt 318

                                                                       
Query: 541 agaactaaagtaagttgattctaattggttgtgtgattaaattgcagaaaggtctggcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agaactaaagtaagttgattctaattggttgtgtgattaaattgcagaaaggtctggcaa 258

                                                                    
Query: 601 agagaaccacatgtagataaatagacgaatagggaagttaataacattacacatgat 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agagaaccacatgtagataaatagacgaatagggaagttaataacattacacatgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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