BAC Information

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BAC

Clone NameMSMg01-322B24
Chromosome6 (Build37)
Map Location 132,164,439 - 132,164,881
singlet/doubletsinglet
Overlap geneLOC631126
Upstream geneKlra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1
Downstream geneLOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322B24.T7 (MSMg01no322_b24.b1)MSMg01-322B24.TJ (MSMg01no322_b24.g1)
ACCAG440906AG440907
length727728
length of high quality
(start - end)
316 (45 - 360)652 (77 - 728)
definitionCHROMAT_FILE: MSMg01no322_b24.b1 PHD_FILE: MSMg01no322_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:01 2005CHROMAT_FILE: MSMg01no322_b24.g1 PHD_FILE: MSMg01no322_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAGCATATACATAATTTGAAGGCCTTGGGTAATTGCTGCTAACT
TCATAACTGACTTTTTGCTAAACTACTACTTCCTTGCACCTGCCTTGGCT
GGTACCTACATTATACCTTCTATCAAAGGAGAATATTTCAGATAACCTCC
CAAAAATGATTATGAAAGCTAGTAGGAAATATAGTAAATGTGTTGAGTAT
ACATTCTCTATTTTACTCTCCCTTAGCCAGTGTGCATTCATGAGATACTA
ATGACTTGAGAGGAAGGAGTGTGAACTGGTCATAGATAGGAGAGGTAGAG
TATACTGTCTTTTTTTATATGCATCCGCAAGGCATAGCCAATTGGACTGT
ATAACAGACTATACCACATAAACAGGAAATAAAAATATCAAGTATATTTT
TGGTATTTGATTGTAAGTTTGGGCATTTGTGAAAATTGTGAAGAATTATG
AGCTCTGATTTTTATCCAAATACCCTGTTCTCATATAGATTGCCTAGCCC
TATTATGAAAGAATTTGGGCATGTTTAAAGCCTGAGAATTCCTTTTTTAA
TATTTTTTTTCAGTAGCTTACTAAAGCAAAATGAATCTCTTCAGACACAA
TCAAATAGATAATGGAATTCTCAGGCATTCTGAGATGAAAGGACACTGAC
ACACACAGGTGACACAAGAAATGCATT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACACAATCCAGTCAGTTGTCTG
GAAATTGATAAAGGCTAAATTAACCTATTCATGTATTAATTTTTGATTCT
CCAAACTTACCAGTAAAGAAATATTCAAACCATAACGTAGAGATTTGCTA
AGCATAGGATATATTACTGTTTATCCATATGGCAGCTCTGAGAATTACAC
CTGATACAACGTTGAGTAGAAAATGAAATTATTGGTGGCAGGGCTTGGGG
GAAGACATGATATGATCTTATGAGGCAAGAAAGCTCCAAATTTATTGTTG
AGTTCTTTAATGTTTAATGTTTTTCATATACTCCTAGGCATGCAGTAGTT
CATTTTCTCTGTGGGATTCTCTTGGATAGAACCAAATCTTTATTTGCAAG
TAGTTCCCAGCAGAAAATATGTTATGAGTTAGGAATGGGAATTTTTTCAC
CACTTCTGTTTTCAGCACTAGGTCATTATCTGGTAGAGATCTCTCCAGGT
TCAGTGCATGCTGTAAAAGTCTCTGTGCATTCACATATATGATGGTCTTT
TTGTGTTTAAAATACCTGTTCCATTGATGTCCTCCATCTCCTCTGACTCT
TTCACTTTTTAGACCTCCTTTGCCACACAGTTTCATGATTTGGGGAAGGG
TTGAGATATATTACTCACTCTCTGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_b24.g1 MSMg01no322_b24.g1 CHROMAT_FILE:
MSMg01no322_b24.g1 PHD_FILE: MSMg01no322_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:01 2005
         (652 letters)



>mm_chr6_132164439_132165492
          Length = 1054

 Score =  687 bits (355), Expect = 0.0
 Identities = 422/447 (94%), Gaps = 10/447 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacacaatccagtcagttgtctggaaattgataaaggctaaattaacctat----tcat 56
           ||||||||||||||||||||||||||||||| | ||||||||||||||  ||    ||||
Sbjct: 443 caacacaatccagtcagttgtctggaaattgttcaaggctaaattaac--attttctcat 386

                                                                       
Query: 57  gtattaatttttgattctccaaacttaccagtaaagaaatattcaaaccataacgtagag 116
           |||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||
Sbjct: 385 gtattaatttttgattttccaaacttaccagtaaagaaatcttcaaaccaaaatgtagag 326

                                                                       
Query: 117 atttgctaagcataggatatattactgtttatccatatggcagctctgagaattacacct 176
           ||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 325 atttgctcagcataggatatattactgtttatccttatggaagttctgagaattacacct 266

                                                                       
Query: 177 gatacaacgttgagtagaaaatgaaattattggtggcagg-gcttgggggaagacatgat 235
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 265 gatacaacgttgagtagaaaatgaaattattggtggcaggtg-ttgggggaagacatgat 207

                                                                       
Query: 236 atgatcttatgaggcaagaaagctccaaatttattgttgagttctttaatgtttaatgtt 295
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 206 atgatcttatgaggcaagaaagctccaaatttattgtcgagttctttaatgtttaatgtt 147

                                                                       
Query: 296 tttcatatactccta-ggcatgcagtagttcattttctctgtgggattctcttggataga 354
           | ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 146 tatcatatactcc-agggcatgcagtagttcattttctctgtgggattctcttggagaga 88

                                                                       
Query: 355 accaaatctttatttgcaagtagttcccagcagaaaatatgttatgagttaggaatggga 414
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 87  accaaatctttatttgcaagtagttcccagtagaagatatgttatgagttaggaatggga 28

                                      
Query: 415 attttttcaccacttctgttttcagca 441
           |||||||||||||||||||||||||||
Sbjct: 27  attttttcaccacttctgttttcagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1054
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1044
Effective search space:   670248
Effective search space used:   670248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)