BAC Information

Click to search

BAC

Clone NameMSMg01-322L02
Chromosome6 (Build37)
Map Location 107,143,821 - 107,327,851
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322L02.T7 (MSMg01no322_l02.b1)MSMg01-322L02.TJ (MSMg01no322_l02.g1)
ACCAG441318AG441319
length750758
length of high quality
(start - end)
292 (73 - 364)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no322_l02.b1 PHD_FILE: MSMg01no322_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:43 2005CHROMAT_FILE: MSMg01no322_l02.g1 PHD_FILE: MSMg01no322_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,143,821 - 107,144,112)(107,327,562 - 107,327,851)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTCTGTTCCTACAGATGTGGTGGTGACAGTTCTCCCTTCCACTA
GGAGTATTGTATGCATTCCCCTCCATTCTCCTTGGAGCCGGGTGAACTAG
CCACTGCCTTGCCCAGTTTCTGATGAGCAATCTGAGCATATTAAAGTAAT
AACTGTGATGTGCATGGAGGGAGACTTTACTACCAGCTGGTCTGATTTCA
TATTCAGTCACTGAATTACCAAGCTTCCCAGATTTCTCAGCCAGCCTCTG
TGGTTAAAGCAGCAGTCACCTTATTGCCATACAACGCAGAATTCTTAGGC
AACAAACTGCCATGTTTTGTCCCCCCCCCCCCCCGCCGATCTAAAATAGG
GGAAAGCATTTCCTCTAACCTCTCGTATGGAATAAAGTTATTCCAGACAT
GTGGTCCAAATGTCTCTTTCCATTCATGGCTCATTATCTCATGGATAATC
GCTGACATCTTTCAATGGACCAAGAGGCTCTCAGAAGTCTGGGTCTAACA
AAGGACTGATAGGAAATTCTAACCTTGGCCTTTTTTTGGGGGGGGGTCCT
CTCAAGGTGAAGCCCACTTACCTTCCAGTAAAGTTTGTTCCAACTTCCAA
TCGCTCAGGTTAATGGGCTACAAAGAACTTTCACTTTCCTTTAACTGCTC
CTATGGCATGCAGAATATTCTTAATCCTCCCGACCAATCCTCTTTAAAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAATTCTTATTGATTTAGAAGCATGTTCATTA
TTGGTGACTCTTTGGTGTACCTCTCCTGAGAAATTTAATTTACTTTTAAC
AGTACTGATCATATTTTTAGTTTGACTCTTTTAGCTATAACTGGTATTAT
GCTTAGCTTACGCATATCTTATATGCTTTGTGATTTAGCCATCTTACTTT
TGGTGCAATTCAATCTTAGAGGAAGTTAGATGAGTTCACTAAAACTATTC
ATATCATTGGTTACTCCATCACTACCTCTTCATCCCGTTTAATTTACTAT
TTCAAGTCTATTGTTTGAAAGACCCCCCACACTATTATTATCATTGTTGT
TTCAGATAGGATCCCGCCCTGTTTTGATTTGATTTGTTTTGTTTTGTTTT
GTTTCGTTTCGTTTCGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCT
GTTCTGTTCTGTTCTGTTCTGTTCTGCTCTGTTTTTCGAGACAGGGTTTC
TCTGTGTAGTCTCCGGCCGTCCCGGAACTCACTCTGTATACTAGTCTGGC
CTCCAACTCAAAAATTCACCTGCCCTCTACCTCCTCAGTGCTGGATTTAC
CGATTTGCATCCCCACCGCCCGGTAGATAAGGGTCTTTGTTACCTAACCC
CAAAGGCGACTTTGGAACTCTGTGATAGTTTTTCCTTGTCCCAACCCTGC
TGAATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_l02.b1 MSMg01no322_l02.b1 CHROMAT_FILE:
MSMg01no322_l02.b1 PHD_FILE: MSMg01no322_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:43 2005
         (292 letters)



>mm_chr6_107143621_107144312
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtggtgacagttctcccttccactaggagtattgtatgcattcccctccattctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gtggtggtgacagttctcccttccactaggagtattgtatgcattcccctcaattctcct 260

                                                                       
Query: 61  tggagccgggtgaactagccactgccttgcccagtttctgatgagcaatctgagcatatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tggagccgggtgaactagccactgccttgcccagtttctgatgagcaacctgagcatatt 320

                                                                       
Query: 121 aaagtaataactgtgatgtgcatggagggagactttactaccagctggtctgatttcata 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aaagtaataactgtgatgtgcatggagggagactttaccaccagctggtctgatttcata 380

                                                                       
Query: 181 ttcagtcactgaattaccaagcttcccagatttctcagccagcctctgtggttaaagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagtcactgaattaccaagcttcccagatttctcagccagcctctgtggttaaagcag 440

                                                               
Query: 241 cagtcaccttattgccatacaacgcagaattcttaggcaacaaactgccatg 292
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtcaccttaatgccatacaacgcagaattcttaggcaacaaactgccatg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no322_l02.g1 MSMg01no322_l02.g1 CHROMAT_FILE:
MSMg01no322_l02.g1 PHD_FILE: MSMg01no322_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:43 2005
         (290 letters)



>mm_chr6_107327362_107328051
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttattgatttagaagcatgttcattattggtgactctttggtgtacctctcctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attcttattgatttagaagcatgttcattattggtgactctttggtgtacctctcctgag 431

                                                                       
Query: 61  aaatttaatttacttttaacagtactgatcatatttttagtttgactcttttagctataa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 430 aaatttaatttacttttaacagtactgaccatatttttagtttgactcttttagctataa 371

                                                                       
Query: 121 ctggtattatgcttagcttacgcatatcttatatgctttgtgatttagccatcttacttt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctggtattgtgcttagcttacgcatatcttatatgctttgtgatttagccatcttacttt 311

                                                                       
Query: 181 tggtgcaattcaatcttagaggaagttagatgagttcactaaaactattcatatcattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 310 tggtgcaattcaatcttagaggaagttagatgagttcactaaaactattcatatcgttgg 251

                                                             
Query: 241 ttactccatcactacctcttcatcccgtttaatttactatttcaagtcta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttactccatcactacctcttcatcccgtttaatttactatttcaagtcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)