BAC Information

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BAC

Clone NameMSMg01-323C22
Chromosome6 (Build37)
Map Location 140,605,478 - 140,606,132
singlet/doubletsinglet
Overlap geneAebp2
Upstream geneLOC100043898, Pik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5
Downstream geneEG664868, LOC664875, Pde3a, Slco1c1, Slco1b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323C22.T7 (MSMg01no323_c22.b1)MSMg01-323C22.TJ (MSMg01no323_c22.g1)
ACCAG441675AG441676
length1,1331,233
length of high quality
(start - end)
270 (466 - 735)619 (135 - 753)
definitionCHROMAT_FILE: MSMg01no323_c22.b1 PHD_FILE: MSMg01no323_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:26 2005CHROMAT_FILE: MSMg01no323_c22.g1 PHD_FILE: MSMg01no323_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACACNNNNNNAGCCATTGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTAGAANNNNCATCCATAAAGCCCCCCAAAAAAAAAAA
AACAAGGNAAGAAGACTTTAAAAACTCCCCGNTGNCAACTTCGGGGGGCA
GGGGGCTGGCCTCCACATCTTTCATTTCCTTTACAAAACTCCTTGACCCT
CCACCACACTGCACATTTGTGAGCAGTTCCTGAGGCCAGGGTTTTATTGA
TGTTGAAAGTCTTCCCTGTTGTCTTATGACACATTTTGAACTCCCATAAG
AAAAGGAAATTGGCCCCCAACTCCAGTCGAAACTCCCTGCTCAACCACAG
GCCAGAATGGCCACCAAAACTCCAGGTGGATCACTGTCTGAGGATGGCTT
TTTTTCTCTGAACTGTGGTCAGGATGTAATGAATGAGAGAAGAATGAATA
AACTTGTGTGTGCGTGTGTGTGTGTGTGTGTGTATACATATACATGTGTG
TGTATGTATATATGTGTATATACATATGGAAATTGCTCAAACTTCCTTTT
GCTCTAATATTACTTCCATAGTATAAGATAAATATAAAATAAAGAGCAAG
TAATAAATCACCAGCCAAGAGAGCATAAGATGTGAATTCAAGCGAGGTAT
AACTTAATATCGAAGAATGTGTTCCAGTATCAAATAGCAGACTTCAACAA
TGCAAAACCTGCAGTTGATTTTTGCACCAATGTGACAGATCCATACACTC
ACAGAAAGAGTTCCTCCACAGTTTGCTAACAGCAAAAGTACACTGTGGAA
AGTTGACGTGCTGCAAAAAAGCACCCCAATGCTTTAGGCCGAAAGCTAAA
GGTGGGTCTTTTGCATTTCTCATTTGCAAGGGGCCTTGGACCTTGACATT
TAACCTTGTTTGGCCTCACACCCCTCGTCCCCTAAAAAAAATGTCCTCTG
CAGTGATCTGAACTTGAAAGAACCCAAGCACCCGGGTCCACAATTTTGAA
CCCAACAACAGCTTGGTCCTCAAACTCCTTTTAACTGTGTAACCCAGTGT
TTTCTCCTCAAGGAAAAAAGAACCTCTGAAAAAAGTTTTTTGTGGTAGGA
GTGGTCTCCACAATAAACCCATTACCCTGAGAA
CCCGATCANNNNNNNGATGACGGCAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAGCCCCATGTTGGGA
ATTGAATTTGGGGNCAGCACCCTTCAGAGTTGCCTTCCAGGATGACTCCC
CTCCTTCATTAAAACACCTCCCGCATCCTAGGCCTTTAACTTCTTTTGCC
TTAGGCTCCTGAGGCTGGGATAAAAGGTATGTTGCCACCTTGCCTGTCTC
TAAACTATTTTTGATCTGTAGAAGTGTGTGGATGGGAGTCGACAGTCGAT
AGGCACATACTATAAAGAAATGGGGCTGGGAGTGGACTTAAGATGTGGTT
TTGAGACAGGTGGTAAGCTCCTGTGAGACAAAGGAGTTAGAGCCATGCAG
GCATTACTATATTTGATGCCAACATAGGGCACATGTAGCAAAATGTAAAG
ACCAAGAGGCCAGAGAATGGTAGGGCATGCATTAGTTTCATTCTATTCCC
AGATAGAAATGATAAAGGGACTATCTCAGATTTCATTTCATTTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGGGCAGGAGAACTCAT
CACAGATGGTTGTGAGCCGCTATGTGGTTGCTGGGAACTGAACCTCTGGA
AGAACAAACAGTGCTGTTAACCTCTGAGCCATCTCTTCACCACCACATAC
CCCCCACCCCCCCAGATAAAACCCTCAGATTTCTTGGACTGACATTTTAT
TGTGCTTGAAGATGAGTTTATATGACAGGAAGTTATCTTTGTGGACATGA
GGTATTGAACAAAGGAAAGTTAAGATCTCTCTCTCTCTCACACACACACA
CACACCCCCACACACACATGTTTTAAAATGACATGCCCGGGTCAGGAAAA
CTCAGCCTTGCAGCCATGAAAACTGTTTAACTAAATTCAAAATCACCATT
TCCTTACCTTACAAAGACAAAACTAAACCCAAACCTAAACCAAAAAACCA
GTGCCAGGCAGCCGTGTGCTTAAAGTTCCTTACATTGAAGGGGTGTAAAC
TAATCTTCCCTGTCCATTTAACCCCAATTTGGCAAATTTTTAGGAAAAAA
AAACTCGTGTGCCATTAAATTACGGGGGGAAATTTGAGAAACAACCTCTT
TGTTATNCATGACCTCCCCCTTCCTATCGCTGTAAACTCATATCTACACA
TGAGCTTAATAGGTGTTCTACTTTCAAATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_c22.g1 MSMg01no323_c22.g1 CHROMAT_FILE:
MSMg01no323_c22.g1 PHD_FILE: MSMg01no323_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:27 2005
         (619 letters)



>mm_chr6_140605278_140606296
          Length = 1019

 Score = 1093 bits (565), Expect = 0.0
 Identities = 615/655 (93%), Gaps = 36/655 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaggatgactcccctccttcattaaaacacctcccgcatcctaggcctttaacttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaggatgactcccctccttcattaaaacacctcccgcatcctaggcctttaacttct 260

                                                                       
Query: 61  tttgccttaggctcctgaggctgggataaaaggtatgttgccaccttgcctgtctctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgccttaggctcctgaggctgggataaaaggtatgttgccaccttgcctgtctctaaa 320

                                                                       
Query: 121 ctatttttgatctgtagaagtgtgtggatgggagtcgacagtcgataggcacatactata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatttttgatctgtagaagtgtgtggatgggagtcgacagtcgataggcacatactata 380

                                                                       
Query: 181 aagaaatggggctgggagtggacttaagatgtggttttgagacaggtggtaagctcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaatggggctgggagtggacttaagatgtggttttgagacaggtggtaagctcctgt 440

                                                                       
Query: 241 gagacaaaggagttagagccatgcaggcattactatatttgatgccaacatagggcacat 300
           ||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||
Sbjct: 441 gagacaaaggagttagagccatgcaggcattactagaaaggatgccaacatagggcacat 500

                                                                       
Query: 301 gtagcaaaatgtaaagaccaagaggccagagaatggtagggcatgcattagtttcattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagcaaaatgtaaagaccaagaggccagagaatggtagggcatgcattagtttcattct 560

                                                                       
Query: 361 attcccagatagaaatgataaagggactatctcagatttcatttcatttctctctctctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcccagatagaaatgataaagggactatctcagatttcatttcatttctctctctctc 620

                                                                       
Query: 421 tctctctctctctctctctctctctct--------------------------------- 447
           |||||||||||||||||||||||||||                                 
Sbjct: 621 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 680

                                                                       
Query: 448 ---ttcgggcaggagaactcatcacagatggttgtgagccgctatgtggttgctgggaac 504
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctttcgggcaggagaactcatcacagatggttgtgagccgctatgtggttgctgggaac 740

                                                                       
Query: 505 tgaacctctggaagaacaaacagtgctgttaacctctgagccatctcttcaccaccacat 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaacctctggaagaacaaacagtgctgttaacctctgagccatctcttcaccaccacat 800

                                                                  
Query: 565 accccccacccccccagataaaaccctcagatttcttggactgacattttattgt 619
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 accccccacccccccagataaaaccctcagatttcttggactgacattttattgt 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)