BAC Information

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BAC

Clone NameMSMg01-323G20
Chromosome6 (Build37)
Map Location 133,326,534 - 133,327,245
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323G20.T7 (MSMg01no323_g20.b1)MSMg01-323G20.TJ (MSMg01no323_g20.g1)
ACCAG441851AG441852
length1,1321,247
length of high quality
(start - end)		711 (92 - 802)624 (135 - 758)
definitionCHROMAT_FILE: MSMg01no323_g20.b1 PHD_FILE: MSMg01no323_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:57 2005CHROMAT_FILE: MSMg01no323_g20.g1 PHD_FILE: MSMg01no323_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGGTACCNNNNNNNGGGCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTCAGAAGATGCAAAACAATGATGGAAGTAGGCAGCG
GGCTTAAGAAAATGACCCACCTAATCAAATAACCAGGGCCCATAGAGGCT
CTCAGAGACTGACACAACAATATCAGACATAGCATTGTTCTGCACTAAGC
CTTCTGAATACATAGTGAGGTTGTTTAGCTTGTAGGTTTTGTGGGACTCC
TAATAGTTTGGTAGAAAACTTACATGAATAGATTGTTATCACTGGAAGTC
CTGGTCTTTTATGGAGAAAAAAAAAGAAAGGAAAGCAGTGATTCTGGAAT
AAAGGGAGCTCAAGGGGTGTAAAAACTGGGAGAAGGGGACAGAATGGAGA
CTATTTTCTGTATGGATTTAAAGAGAATAAAGTAAAGACAAAGAACAGAG
AATAAAAGAAGTTGAAGGTTGTCTACAGTTAGAACCTGGGCTTCATAGGA
CCCTATCAAAACTGCAAATAATAAAAATAATTTAATCTGGCTGGAGAGAT
AGCTCAGTGATGAAAGCCACTGACTGCTTTTCCATAGGTTAAGTCCAAAT
CCAAGCAACCACATGCTGACTTAGAAACCATCTGTAATGGGATCTGATAC
CCTCTTCTGATGTACTCATATATATGAAATATATAAATTTTAAGATATCA
TATCAGCACCAAAAAGTTAATCTATGCCATAGCATGATATCAGAAAATGA
ATAGCTGTAGGAAATCCTTCTGGAGAAATGGTCAAGAATTTTTCTCTCTT
TAGTAGATTTATTTCAAGTAAGAGAGAGGCATGAAGAAAGTCATAGTAAT
TAAAAAGAAGGAATTCAATTATAAGTTTTTTCAATTCACATCAATAGAAC
TAAGTTGAAATCCACACATCTATCATTTATGTACGAGTTGCATAATTAAA
AATTGACAAAATTTTAAGAAATGTTAAAAAAATGGAAACACTTAACTTTA
AATCCAAAAAATCGGAACAGGAAAATGCCACTTGTTTCTAAAAAAAGTAC
AAATTTTGGACCAAGGAAACTATGGAAGGGTTTCCGGGGTGGAAAAACCC
ACGGGTTTCCCACCCCCCCCACAAAAATCCCC

NNCCAAACCCNNNNNNAACGAGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGAGACGCCTAAGGAGACC
GAACCTAAGGATAAAAGGTCTTTAAGGTACTGAAGATTTTCAACTTAAAG
GGCCAGTAAATATCTTCATCAAAATTATAGAAGAAAACTTCCTTAACCTA
AAGAAAGAGATGCCCATGAGTATGCAAGAAGCCTACAGAACTCCAAATAT
ACTGGACTGAAAAAGAAATTCCTCCCAACACATAATAATCAGAATGACAA
ATGCATTAAATAGCCACATGAACAGAATCAAAACCCTAACAACAAAACTA
AGAGGAAGCAACAATTACTTTTTTTAATATCTCTTAATATCAATGGCTTC
AATTCCCCAATAAATTTACACAGACTAACAGACTGACCACATACACAGGA
CCCAACTTTTTGCTGTACACAAGAAACCCACATCAGATACAAAGACAGAC
ACTACCTCAGAGTAAAAGGTTGGAAAACAATTTTCCAAGGAAATGGTCTG
GAGAAAGAAGCTTGAGGAGCCATTCTAATACTGAAAAAAGTTGAATTTCA
ACACAAAGTTATCAAAACAAAACAAACAAAACAAAACAAACAAATAAACA
AAAACAAGGAGGGGCACTTCATACTCATCAAAGGTAAAATCTTCCATGAT
GAACTCTCAATTCTGAACATCTATGCTCCAAGTGCAAGGGCATTCATTAA
AGATAGTANAGCTCAAAGCACACATTGTACCTCACAAAATAATAGTGGGA
GACTTCAAAACCCCACTCTCATGAATGGACAGATCCTGGAAACAGAAACT
AAACAGAGACACGGTGAAACTAACAGAAGTTATGAAGCAAATGGATTTAA
CAAATATCTATAGTACATTTTACCCTAAAACAAAAGATCACAAAACAGGC
CCTCACAGATACCAAAATATTGAAAAAATCCCATGCATCCTATCCGATCC
AACAGACTAAGGCTAATCTTCCTTTACACTTAATAGGAAAAGCCCCCTTC
CCCTTGGAAGCTGGAAACCCCCTCGTCATGACAATTGGTCCAAGGGAAAG
TAAGAAGAAGTTAAGAATTCTTTAATTTTAGTGAAACCCAGCCAAAAAAA
CCCAAATTTTTGGCCCCAAAGGGGAGCGGGCCAAGAGAAAAAATTATTGT
GGAGAGCCCCCACAGAAAATGGGTAAAGAAAAAATAAAACTCTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_g20.b1 MSMg01no323_g20.b1 CHROMAT_FILE:
MSMg01no323_g20.b1 PHD_FILE: MSMg01no323_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:57 2005
         (711 letters)



>mm_chr6_133326335_133327445
          Length = 1111

 Score = 1307 bits (676), Expect = 0.0
 Identities = 703/712 (98%), Gaps = 1/712 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggcagcgggcttaagaaaatgacccacctaatcaaataaccagggcccatagaggctc 60
           ||||||| |||||||||||||||||||||  |||||| ||||||||||||||||||||||
Sbjct: 200 taggcagagggcttaagaaaatgacccacagaatcaactaaccagggcccatagaggctc 259

                                                                       
Query: 61  tcagagactgacacaacaatatcagacatagcattgttctgcactaagccttctgaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcagagactgacacaacaatatcagacatagcattgttctgcactaagccttctgaatac 319

                                                                       
Query: 121 atagtgaggttgtttagcttgtaggttttgtgggactcctaatagtttggtagaaaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atagtgaggttgtttagcttgtaggttttgtgggactcctaatagtttggtagaaaactt 379

                                                                       
Query: 181 acatgaatagattgttatcactggaagtcctggtcttttatggagaaaaaaaaa-gaaag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 acatgaatagattgttatcactggaagtcctggtcttttatggagaaaaaaaaaagaaag 439

                                                                       
Query: 240 gaaagcagtgattctggaataaagggagctcaaggggtgtaaaaactgggagaaggggac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaagcagtgattctggaataaagggagctcaaggggtgtaaaaactgggagaaggggac 499

                                                                       
Query: 300 agaatggagactattttctgtatggatttaaagagaataaagtaaagacaaagaacagag 359
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaatggagactatggtctgtatggatttaaagagaataaagtaaagacaaagaacagag 559

                                                                       
Query: 360 aataaaagaagttgaaggttgtctacagttagaacctgggcttcataggaccctatcaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aataaaagaagttgaaggttgtctacagttagaacctgggcttcataggaccctatcaaa 619

                                                                       
Query: 420 actgcaaataataaaaataatttaatctggctggagagatagctcagtgatgaaagccac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actgcaaataataaaaataatttaatctggctggagagatagctcagtgatgaaagccac 679

                                                                       
Query: 480 tgactgcttttccataggttaagtccaaatccaagcaaccacatgctgacttagaaacca 539
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 tgactgcttttccataggttaagttcaaatccaagcaaccacatgctgacttagaaacca 739

                                                                       
Query: 540 tctgtaatgggatctgataccctcttctgatgtactcatatatatgaaatatataaattt 599
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctgtaatggaatctgataccctcttctgatgtactcatatatatgaaatatataaattt 799

                                                                       
Query: 600 taagatatcatatcagcaccaaaaagttaatctatgccatagcatgatatcagaaaatga 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taagatatcatatcagcaccaaaaagttaatctatgccatagcatgatatcagaaaatga 859

                                                               
Query: 660 atagctgtaggaaatccttctggagaaatggtcaagaatttttctctcttta 711
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 atagctgtaggaaatccttctggagaaatggtcaagaatttttctctcttta 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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