BAC Information

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BAC

Clone NameMSMg01-323G24
Chromosome6 (Build37)
Map Location 56,535,305 - 56,535,881
singlet/doubletsinglet
Overlap geneEG666688
Upstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneLsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323G24.T7 (MSMg01no323_g24.b1)MSMg01-323G24.TJ (MSMg01no323_g24.g1)
ACCAG441859AG441860
length1,1001,024
length of high quality
(start - end)
577 (127 - 703)---
definitionCHROMAT_FILE: MSMg01no323_g24.b1 PHD_FILE: MSMg01no323_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:58 2005CHROMAT_FILE: MSMg01no323_g24.g1 PHD_FILE: MSMg01no323_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGCCCTNNNNNAACCACTGGGCGCTAAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTAATATTTTGGCCTTTAAGCTCCGTCAGATGTAAGGTT
GGTGAAGACTTTCTTTGCATTCTGCAGGCTGACATTTTGTTCTTCTAATG
GTGTTCTTTGCCTTAGAGAGTCTTTTCAGTTTCATAAAGTCCCATTTATT
AATTGTTGATCTTAGTGCCTTAGCTTTTGGTGTTCTGTTCAGAAATTTGT
CTCCTGTGGTCTAAGCCTGCTGCATGCTTTGGTTTCAATTTTCATGTTTC
TCTGTTGTAAATATAGATTGTGACTCTGACTTCACTTGTGGTGCTGAGTC
CACGGGGAACAGAGCTCTGAGGCCCACTCAGCAGACCTCTGTGTTTTGTA
TGTGCTCTGAACATGCTTCCTTCTCCACCCTGTCTATTCAGTGTTTGCCG
AGATGCTCAGCGTGCTACATGTAGGGTGAGATGTTCCTTAAACTTACTTG
ATTGAGATGGATGTGTGAAAGTTAGAGTACAGGTATGACTTTTTTATGCA
TGTGTGTAAGAATAAGACAGTTGTGGGGAGGGTTGTGTAAGTCAAGTAAA
TATATACAAATTAAACAAGAAAACACCTCGTTTAATAAAACCTCTGCTAT
TTGTGATAGATGCAATATTTGAAACTCGAAATATATACACAATTTAAGTA
CACTGAAATATAGATTGGGTAGTTTCAATGAGACGCAAACTTTTGCGAAT
GTTATAGAATGTTACCACGATAAGAATTTGGTAAAACAAAAGGAAAATTA
GTCACCTGATAGGCTGGTGAACAGAAGCTTAGCAACTTTCCCGTCGTCCA
GGTGGGTCACCAATCAACTTTGTCTTCGCCCCTTTTCTACTGCGTCCCTG
GTGAAGAACACGAAATTGGGCTGTGGCCCCCTCAAACCATGGCCCTGTGG
GGAAAGCCCCTGCCCCATCCCCATTTGGTCCTTGGCACTTTTTGGGGGGT
ACTTAAAAAGGCCATGAAATGGAATTTCCCCTGGAACCCCCCGCTTTTCA
GATTACCCTTAAAATTTCTCTCTAATCAAAAACCGGCGAAAAACAAATGC

TTATGGGCCGATGGAGCTGGGGCGCTGGCCGTGAATTTGGTGAATTAAGA
AGGATTGAGGACCCTCAGGTTCTCNGGNNGNNNNNNGNGGNNNNNNNNNN
CCTTAAAAGGCTCCNGNNGNNNNGNNNNNNNNNNNNNNNNGGGNNGNNGG
GGGGNNGNNNGNNNNNNNNGGCCCNNGNGGGCGGGCGNNNNGNNNNGGGG
GGGNNGGGGGGNGGGGGGCCGGGGNNGNNNNNNNNNGGGGGGGGGGGNNN
NNGNNNCNNGCNNCNGGNNCGCGNNNNNGGCGGCNCNNNGNNGCNGGGNG
NNCCNNCNGCGGGCCCCTTTTTTNCNGGGNNNNGCCNNCNGGNNCNCGNN
GNNNGGNNGCGNGCNCGGGCNNCCCNGNGNNNNNCTTTTTTTGGGNCCNN
CCNCCCCNCCCGCCCGNNNGNGGGGGGGGAGACCGCCCCCCNNGGGCCCC
CCCCCCCGCNNGGGGNGGNNNNNGGGGGGGGGGGGGGGGNNCNNNNNNNN
NGGNGNNNGNNNNNNNCNGGNCNNNGGNGGGGCNGGGCNCGGGGGGNNCN
GGGNNCNGGCNNGGGGGGCGGCGGGGGGNNGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCNGGGGGGGGGGGGGGGGGNGGGGNGGGGGNGGNGGGG
NGGNGGGGNGGGGGGGGGGGGGNGGGGGGGNGGGNGGGGGGGGGGGGGGG
GGGGGGNNNNGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGNGNG
GGGGGGGNGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGG
GGGGGGGGGGNGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGNNGGGGGGGNGGGGGGGGGCNGGGGGGGG
GGGGGGGGNGGGGGGGGGGGGGGGGCGGNGNGGGCGGGGGCGGCGGGGGG
GGGGGGGGCGGGGGCGGGGGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_g24.b1 MSMg01no323_g24.b1 CHROMAT_FILE:
MSMg01no323_g24.b1 PHD_FILE: MSMg01no323_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:58 2005
         (577 letters)



>mm_chr6_56534974_56535950
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctgacattttgttcttctaatggtgttctttgccttagagagtcttttcagtttcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ggctgacattttgttcttctaatggtgttctttgccttagagagtcttttcagtttcata 849

                                                                       
Query: 61  aagtcccatttattaattgttgatcttagtgccttagcttttggtgttctgttcagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aagtcccatttattaattgttgatcttagtgccttagcttttggtgttctgttcagaaat 789

                                                                       
Query: 121 ttgtctcctgtggtctaagcctgctgcatgctttggtttcaattttcatgtttctctgtt 180
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 788 ttgtctcctgtggtctaagcctgctgcatgctttggtttcgactttcatgtttctctgtt 729

                                                                       
Query: 181 gtaaatatagattgtgactctgacttcacttgtggtgctgagtccacggggaacagagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtaaatatagattgtgactctgacttcacttgtggtgctgagtccacggggaacagagct 669

                                                                       
Query: 241 ctgaggcccactcagcagacctctgtgttttgtatgtgctctgaacatgcttccttctcc 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 668 ctgaggcccactcagcagacctctgtgtttagtatgtgctctgaacatgcttccttctcc 609

                                                                       
Query: 301 accctgtctattcagtgtttgccgagatgctcagcgtgctacatgtagggtgagatgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 accctgtctattcagtgtttgccgagatgctcagcgtgctacatgtagggtgagatgttc 549

                                                                       
Query: 361 cttaaacttacttgattgagatggatgtgtgaaagttagagtacaggtatgactttttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cttaaacttacttgattgagatggatgtgtgaaagttagagtacaggtatgactttttta 489

                                                                       
Query: 421 tgcatgtgtgtaagaataagacagttgtggggagggttgtgtaagtcaagtaaatatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgcatgtgtgtaagaataagacagttgtggggagggttgtgtaagtcaagtaaatatata 429

                                                                       
Query: 481 caaattaaacaagaaaacacctcgtttaataaaacctctgctatttgtgatagatgcaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caaattaaacaagaaaacacctcgtttaataaaacctctgctatttgtgatagatgcaat 369

                                                
Query: 541 atttgaaactcgaaatatatacacaatttaagtacac 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 368 atttgaaactcgaaatatatacacaatttaagtacac 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)