BAC Information

Click to search

BAC

Clone NameMSMg01-323L20
Chromosome6 (Build37)
Map Location 131,274,276 - 131,274,822
singlet/doubletsinglet
Overlap genenone
Upstream geneKlra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1
Downstream geneCsda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323L20.T7 (MSMg01no323_l20.b1)MSMg01-323L20.TJ (MSMg01no323_l20.g1)
ACCAG442076AG442077
length1,2591,298
length of high quality
(start - end)		740 (95 - 834)745 (127 - 871)
definitionCHROMAT_FILE: MSMg01no323_l20.b1 PHD_FILE: MSMg01no323_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:38 2005CHROMAT_FILE: MSMg01no323_l20.g1 PHD_FILE: MSMg01no323_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGATTCTNNNNNNATCATTGGGCGCTNXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTGCTAGAGCAGCCCCCCTTTAACACGTCCATTGAT
GAGACTCACATTCTCATTGATCCCTTGAAGCATTCTCTGGACTGAGCATG
AAGAATGAGCTCAGTTGCATGGATTAAGAATGAAACTTCCAGTGCATTGA
GATAAGTCTACTCCAGGTATCTGATTCTTGTCTTTAAGTTCTTTCTGCTA
CTGGAAAGAGATAATACATTCACTTTATTCTGTGGACTTGGCTGTCTCCC
AGACTGGGCCAGAGAGTGACCTTAACAATCACCAGAAAGAACTCATTAAA
CTCAAGACTCCACCCTGACAGTAGGTCAGGAGAGCAATTTTGAAAACTCA
TTAAAATAGGAAAAAAAAGTTATATCTGATCATATTTCAAAGTTTTTTAA
CACATGGTCTTACTGTGTGGATCAGGGCAGCTTTAAACACACAGTACTCC
TCTTGCCTCTGCCTCCCATGTTGTGGGATTTTAGGCATGTATTTAAATGT
ATTTTCAAAAACTACTAATTAAACTGAGTGTGGAGGTACACGCATTCAAT
CTTGGTACTTAGGAGGCAGAGGCAAGTATATCTCTGGGAGTCTGTGGCCA
GTAGGGTCTAAAGAATGAGCTTCAGGCCAGCTAGGGCTTCATAGTGAGAT
CCTGTCTGTCTCTATGGTAAAAAAATAAAATTACTAATTCATATAAAAGT
CATTATTATCTCCCTTCATTTTTATCAATTTCTTTATTAGCATATCAGTT
TTCTCATTATACTAAAATCATTGTGTTTTTATGTGTATCAATTGGCTTTT
TCAGTGTGATTTTTTTTCCCTATGGGAAAATATCTCATCTTTGAAGTTTA
TGAAGTAATAATTACCAATCTCATAAAGCCTATAACATGAACACCTGCTT
CTCCGGAAAAAAGTGCTTTTTTTTCCACAAAAACCATTTTTTTTTCATGA
AGGAAGGGTGGGATTATTTTTTTTCCAAAAAAAACCCCCGGCTGAAATTT
AAAAAAATAAAACCCCGCCCTTGTTTGGTTTCTCTGAAAACTTTTTCTTG
TTTGGAGAAAATGGGGGAGGGAAAAAAAAAACCCTTTTCCTTTAAGGGGG
GGAAGAACATGGGGAAAATTTTTATAATCTTCTTAAACAAAAAGAAGAGG
GGGGGACCCTATATGTGTTACTGGTTTTAAAAACACTCTGAATTCATTTC
CCTTCTTTT

NNCCCTATTCTATNNNNAAGATGCGATGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAACGACCCAAACTGAGT
GGCAGAGAAGCACCTGAACATATGATCAACATCCTCAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTTACACCAGTCAAAATGGCT
AAGATCAAAAATTCAGGTGACTGCAAATGCTGGCCAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGCATTGCAAGCTTGTACAACCACTTT
GGAAATCAGTCTGGCGGTTCCTCAGATAATTGGACATAGTACTACCAGTA
GATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAA
CCAGAAGCTGGAAAGAACCCAGATGCCCTCAACAGAGGAATGGATTCAAA
AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAACAAGAAT
GAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAAGGCATCATCCT
GAGTGAGGTAACAAAATCACAAAAGAATTCAAATAATATGTACTCACTGG
TAAGTGGATATTAGCCCAGAAACTTAGTATAGTGAGATATAAGGTACAAT
TTGCAAAACACATGAAACTGAAGAAGAACGAACCAAAGTGTGGACACTTT
TCCCCTTCTTAGAATTAGAAACAATCACCCAAGGAAGAAGTTACAGAGAC
AAAGTTTGGAGCTGAGACAACAGGATGGACCATCAAGAGACTGCCATATC
CAGGGATCCATCCCATAATTAGCCTCCAAATGATGACACCATTGCATAAA
CTAACAAGTGTTTGTTGCAAGAAACATGATATAACTGTCTCTTGTGAGAC
TAAGCCGGGGGCTAACAAACACAAAAATGGATGTTCCCAGGCCACTAATG
GAGGAATCCCAGGACCCCCCCCCAAAGAGTTAAAAAAATATTCCACGAGC
TAAAGAAAACTGGCCCCCTGGGGAATACACATTTTTGAATTAACCGNACC
CCCGGAACCCTTGACTCTACTGGGATAGTATAAAAAAAAGCACACCCGCC
ACCTTGCAAAAAAAACCCCGGGACAGGAAACTATATTGTCTCCCACAGGG
AAAGCCCGGCCAAAAAGGAAAGGGGGGGGGAAGAGGGNNNNNNNNCTCNN
NNCTTNNNNNNNTCCCCTCCATCATCTAATCCCCTATACCTCATACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_l20.b1 MSMg01no323_l20.b1 CHROMAT_FILE:
MSMg01no323_l20.b1 PHD_FILE: MSMg01no323_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:38 2005
         (740 letters)



>mm_chr6_131274276_131275414
          Length = 1139

 Score =  996 bits (515), Expect = 0.0
 Identities = 540/549 (98%), Gaps = 5/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgatgagactcacattctcattga-tcccttgaagcattctctggactgagcatgaag 59
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 547 attgatgagactcacattctcattgattccc-tgaagcattctctggactgagcatgaag 489

                                                                       
Query: 60  aatgagctcagttgcatggattaagaatgaaacttccagtgcattgagataagtctactc 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 488 aatgagctcagttgcatggattaaaaatgaaacttccagtgcattgagataagtctactc 429

                                                                       
Query: 120 caggtatctgattcttgtctttaagttctttctgctactggaaagagataatacattcac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caggtatctgattcttgtctttaagttctttctgctactggaaagagataatacattcac 369

                                                                       
Query: 180 tttattctgtggacttggctgtctcccagactgggccagagagtgaccttaacaatcacc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttattctgtggacttggctgtctcccagactgggccagagagtgaccttaacaatcacc 309

                                                                       
Query: 240 agaaagaactcattaaactcaagactccaccctgacagtaggtcaggagagcaattttga 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aggaagaactcattaaactcaagactccaccctgacagtaggtcaggagagcaattttga 249

                                                                       
Query: 300 aaactcattaaaataggaaaaaaaagttatatctgatcatatttcaaag--ttttttaac 357
           ||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||
Sbjct: 248 aaactcattaaaatagg-aaaaaaagttatatctgatcatatttcaaagttttttttaac 190

                                                                       
Query: 358 acatggtcttactgtgtggatcagggcagctttaaacacacagtactcctcttgcctctg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acatggtcttactgtgtggatcagggcagctttaaacacacagtactcctcttgcctctg 130

                                                                       
Query: 418 cctcccatgttgtgggattttaggcatgtatttaaatgtattttcaaaaactactaatta 477
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 129 cctcccatgttgtgggattttaggcatgtgtttaaatgtattttcaaaaactactaatta 70

                                                                       
Query: 478 aactgagtgtggaggtacacgcattcaatcttggtacttaggaggcagaggcaagtatat 537
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 69  aactgagtgtggaggtacacgcattcaatcttggtacttaggagtcagaggcaagtatat 10

                    
Query: 538 ctctgggag 546
           |||||||||
Sbjct: 9   ctctgggag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1139
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1129
Effective search space:   824170
Effective search space used:   824170
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |