BAC Information

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BAC

Clone NameMSMg01-324O07
Chromosome6 (Build37)
Map Location 97,883,902 - 97,884,160
singlet/doubletsinglet
Overlap genenone
Upstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241, LOC100043692
Downstream geneMitf, Gm765, LOC666019, LOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324O07.T7 (MSMg01no324_o07.b1)MSMg01-324O07.TJ (MSMg01no324_o07.g1)
ACCAG442921AG442922
length739780
length of high quality
(start - end)
175 (74 - 248)261 (77 - 337)
definitionCHROMAT_FILE: MSMg01no324_o07.b1 PHD_FILE: MSMg01no324_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:19 2005CHROMAT_FILE: MSMg01no324_o07.g1 PHD_FILE: MSMg01no324_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXAATTCGGAGCGGAGCCGCGG
AATTCACAGCTATCGACTACTTGACACTTGGGGCCAACTCCTTATGGTGG
TGGTTGGGGGCGGGGGGTTGCGCTGTGTGTGCATCGTCAGAGCTTTAGTG
GTATCCCTAGTCTCTGGTTCCAAATGCTAGATGCACCATGTCCTGGACAC
ATGACAACCTACAGTGTTTCCAGGCTGTTTGAAATATCCCTTCCAGGGTT
TTGTAGAGGGATAATGGGATGCGCGTCGGGGGTTAATGTGACTCCAGGTA
GGAACTCTTACAGTTTGTGCTTTCTTCTCAAAGAGCCACAAACTAGAGAG
CTAATTGATTATTACTACCCACCACCAAAAAGGCGGTGTTGCTTGCACAG
TCATAGAAGCATGACCCCCTGATCTGTATACCCATACTCGGTGTGTAAAA
TCATATGCATGGTTATGTGCCTGCACAACTCCTGCATGTGAGAATCATAT
TCTTACTATAACTTACTATTTCTTCCTACTATATCATTATTGCTGCGTTT
TATATCAATGAGAGAAATCCGTCTCATATAAAGCCAATTTGCTCCCGGCC
TAACCGCCAGTTTGCCCTTTTCTACCCCCCCTCGTTCCTTCACTTCTCTT
CCACACTTTTTTTTTACCTCTTCCCCTACCCACTTTACCATGCCAACTCC
ACCACACAATTATCATTATATATAAAATTTTTGATTTCG
CCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGACATATCAAAACAAGCTTGA
GCTAGAGTAGAGATGGGTCGGCCTTTCTGAACCAATGTTTAGGGGTAGTC
CAGAGTTACGCAGACTTCAGGGATGGCTTGATCCCTTTAGTGCTGTCTGG
ACACAGTGCTCTCCCTTTTGTTCTTTGGTTCCTGCAGCCCTTGCTACTGT
TTTGTACTTCACATTCTTGTTTCTAGTCTGAGATAGATGCATGAAACTCA
GTGTTCACTTCCTGCCAGATTTCTGGNTTGTCAAGGCAGAGTTATNTCTT
ACCGCTACAGTTTCCTAGTCAGAAAAATGGAAAACCCACCTGGTTCCCAT
TGGGAAAGGGTTCCCCTTTTTTCGGAAACCCGTGGGGCCCCCCCCTTTGG
GGTTCCTATATTACCTTTTTAATAATTAAATTTAAAAACCCCCCTCTCTC
TTTTTCGCGGGTTTTTTCCCCCTTGGGTCGCTCTGTTTTTCCTTCTTTTT
CTTATTATCCTTTACGTCTCTGCCCCTCCCTCTTTTTTTATCTCTGTTTC
CCACCAACATTTTTCCCTCTTTTTTTTTTTTTTCTACTTTTTTAGTTCCC
TTTTCCCCCTTCCTTTTTTTTTTCCGTTTTTCTTTTCTTCCCTCCCCTTT
TTTTCCTCCCCTCCTCTCTTTCACCTCCATACCCTCAATATTTTTTTTTA
TTATACTTTCACTTTCCCTCTTTTAATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_o07.g1 MSMg01no324_o07.g1 CHROMAT_FILE:
MSMg01no324_o07.g1 PHD_FILE: MSMg01no324_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:19 2005
         (261 letters)



>mm_chr6_97883702_97884361
          Length = 660

 Score =  472 bits (244), Expect = e-137
 Identities = 256/260 (98%), Gaps = 1/260 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagacatatcaaaacaagcttgagctagagtagagatgggtcggcctttctgaaccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagacatatcaaaacaagcttgagctagagtagagatgggtcggcctttctgaaccaat 260

                                                                       
Query: 61  gtttaggggtagtccagagttacgcagacttcagggatggcttgatccctttagtgctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaggggtagtccagagttacgcagacttcagggatggcttgatccctttagtgctgt 320

                                                                       
Query: 121 ctggacacagtgctctcccttttgttctttggttcctgcagcccttgctactgttttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggacacagtgctctcccttttgttctttggttcctgcagcccttgctactgttttgta 380

                                                                       
Query: 181 cttcacattcttgtttctagtctgagatagatgcatgaaactcagtgttcacttcctgcc 240
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| 
Sbjct: 381 cttcacattcttgtttctagtctgagatagatgcacgaaactcagtgttcgcttcctgct 440

                               
Query: 241 agatttctggnttgtcaagg 260
           |||||||||| |||||||||
Sbjct: 441 agatttctgg-ttgtcaagg 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 660
Length adjustment: 9
Effective length of query: 252
Effective length of database: 651
Effective search space:   164052
Effective search space used:   164052
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)