BAC Information

Click to search

BAC

Clone NameMSMg01-324P02
Chromosome6 (Build37)
Map Location 54,438,651 - 54,438,897
singlet/doubletsinglet
Overlap geneWipf3
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926
Downstream geneScrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324P02.T7 (MSMg01no324_p02.b1)MSMg01-324P02.TJ (MSMg01no324_p02.g1)
ACCAG442956AG442957
length759747
length of high quality
(start - end)
377 (47 - 423)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no324_p02.b1 PHD_FILE: MSMg01no324_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:23 2005CHROMAT_FILE: MSMg01no324_p02.g1 PHD_FILE: MSMg01no324_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAAATCCGCG
GAATTCTCACCTGATTAATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGAT
TCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGTATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAGTAT
GTTCATAGCAGCCTTATTTATAACAGCCAGAATCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTATAAAGAATGAATTTATGACATTCCTAGCCAA
TTGTATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACTAT
GGAACTCACTCAATATGTACTCACTGAAAATGTGGATATTTATTCCATAA
CCTCATAGAAACCCCTAAATATATTTATAACTATTTTTCCAAAATATTCT
CGTACCCCCTTTAAAATATCATTACTGATTTTGGGGTACACCTAAATTTT
CCTTTCTTT
CCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGTACTCTTTTTGAACACTAG
CTAGTACCAGGTTCTTTGTTGGTTCCTCCCCCTGCCTGGAGCCCTTTTCT
GTTCCTTCAGTGGCTCCCTTAGGTGGGCGGAGGATCTCGGGCATGGTGGT
GGGGAATTACTGCCCTTGCCTCTGCTGCATCCCCTTGTCCAGCCAGGAAC
ACTTGAAAAGCAGGTGGACTCTTGGAGAAATAACTCTGCCATCCAAACCC
TTGCAAGCAAGCAGCAAGCAGGGTGTCCTGCCAGAGTGACCTGTGTCCCT
CTGATAACAGTCACACGTGGGTCACTCAGGAGTAATCTTAAGTACACTCC
AATTCCCATATTTCTCACACGCACAGATGACTTCGAGTCTAAATTCACGT
TCCACTCCATGGAAGACTTTCCCCCTCCAGATGAATACAAACCATGTCAG
AAGATTTACCCCAGCATGGTCTCCAGAAGTAAGTACTTGCTTTACCAAGA
CCCTCCATAATACAGGGTGTCTGCAGATAGCATCATGTCTTTACTGTCCG
TTAGCAAGGATGCTGAGTGTGCCCAGTCCCACTACCTTAAGGATATGCTT
TTGTCCTGATGCCTACTGCTTCCCTGAATGATGTCTATAGATTGCCAGAG
TTCACTGCCATTCCCCTGTGTATATGCTGATATGATCCATGTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_p02.g1 MSMg01no324_p02.g1 CHROMAT_FILE:
MSMg01no324_p02.g1 PHD_FILE: MSMg01no324_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:23 2005
         (247 letters)



>mm_chr6_54438451_54439097
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaggtactctttttgaacactagctagtaccaggttctttgttggttcctccccctgc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaggtactcttattgaacactagctagtaccaggttctttgttggttcctccccctgc 260

                                                                       
Query: 61  ctggagcccttttctgttccttcagtggctcccttaggtgggcggaggatctcgggcatg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggagcccttttctgctccttcagtggctcccttaggtgggcggaggatctcgggcatg 320

                                                                       
Query: 121 gtggtggggaattactgcccttgcctctgctgcatccccttgtccagccaggaacacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtggggaattactgcccttgcctctgctgcatccccttgtccagccaggaacacttg 380

                                                                       
Query: 181 aaaagcaggtggactcttggagaaataactctgccatccaaacccttgcaagcaagcagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aaaagcaggtggactcttggagaaataactctgccatccaaacccttgcaggcaagcagc 440

                  
Query: 241 aagcagg 247
           |||||||
Sbjct: 441 aagcagg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)