TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTACATTACCCTGTGAATAAGGCTTAATTCTTCAGTGTGATCT
GTAAGATTGGTTTGGACTTTAAGGCTGAATACATAGGCTCCATCCACTGC
TACGCGCACTGTTGACACTATTAGTGAACTGCTGGGAGGCAGACGTGAGG
AAATAAAGGGGGAGGGAGAGATGACCCACATCCCGCCAGAGCTTGGGGTC
TCTGAGCAGACAGACACGGGAGACTGCCACTTGTTCTCCATACCGCCAGG
TGGGAGTCTGGATGTGAGAAGCCACGGAACTCCATTCTGCATGGGTAGAG
AGGGAGCATTCTGAGGTCCCTGGGCCTCACCGAGTCCAGAGGCAAGGTTC
TAGCTCTTGAACATCACAGCACCCGCACACCACAGAAGAGCTGTACACCG
CAGAAGAGGTGCGGGATGGTTGGAGGCTTAGTCAGCCCCAGGCCGAAGAG
AATAAGGGTAGGGGGAGAAGGCACTGTGTGGTTCCCACACAGGTGAAAAC
CTTTGTTCCGGTTTGGAGGCTGGAAATGCTGGGAGGCCTTCCTGCTGGAG
ATTAGACATGCTCTTTGGGGGAAGGCCTATTGCATTATTCTTGCATGGTG
TGTCTTGAAGAGCAGAGACAGCACATGGTTTTAGAGCTTTATTGTAGAAA
ATCAGAGAGAGAGAG

AACGATGCAGCGGTAGGCCTGGNGGNCGCCTGTTTTCCCCACCNGCANGA
NANNANAGAAGGTTTCANGGACGGGAGNCNGNGNNACAAANNNANNCAGG
AGNCCAAAAAGACAGNGCAAACCCCACAAAACANGACGNAAGCNCCAACA
CAANCAAGAGCCAACCAGNCNGAANCNNNACNCNAAACAAAGGACANCGG
CCAGCNAACGGAACAAACCACAGCAAAAACNGGCCAAAGCAGACACAAGA
ATTTTTACCCNNNCCACCNGACAAGGAAGAAGACGCAGAGCCAANACCCA
CCCAAAAAAAAACCCTTTTTTTTTTTTTACNACAACCACANCCCCAACGC
NANCCCAAAAATTTTTCATACCCCCCCCCCCACTCCCCTACCTTGGGCAC
TCAGTTCCAATGCTGCAATCACGATGCAATCCAAATCTCATAAGGCAGGA
ACAGGGTCAAAGCTGAAAACATGTTACTGTTCTGAGTCACTGATGACATG
GGCGACTATAGAGAAAGCAAATCTGCTGATGCAAAAGAGAAAGCATTTTT
CAGAGAAGTCCCAGACTTGAGCCCTTCACGCTTTCTTTGACATAATTGAT
ACAGCTTCTCTACCACTTTCCAGGGGACAGAAGTCATAGTGAAAAGAACT
TTTTTTTTTGAATCCCCCTCGCTCAAAGAAACCACAACTGAACATTTTTC
CAAACTCGCTTCTAAGA

Query= MSMg01no325_a09.b1 MSMg01no325_a09.b1 CHROMAT_FILE:
MSMg01no325_a09.b1 PHD_FILE: MSMg01no325_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:29 2005
         (554 letters)



>mm_chr6_103172483_103173436
          Length = 954

 Score =  973 bits (503), Expect = 0.0
 Identities = 539/551 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttctacattaccctgtgaataaggcttaattcttcagtgtgatctgtaagat 63
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattccttctacattatcctgtgaataagggttaattcttcagtgtgatctgtaagat 263

                                                                       
Query: 64  tggtttggactttaaggctgaatacataggctccatccactgctacgcgcactgttgaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 tggtttggactttaaggctgaatacataggctccatccactgctacgtgcactgttgaca 323

                                                                       
Query: 124 ctattagtgaactgctgggaggcagacgtgaggaaataaagggggagggagagatgaccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctattagtgaactgctgggaggcagacgtgaggaaataaagggggagggagagatgaccc 383

                                                                       
Query: 184 acatcccgccagagcttggggtctctgagcagacagacacgggagactgccacttgttct 243
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 acatcccgccagagcttgggggctctgggcagacagacacgggagactgccacttgttct 443

                                                                       
Query: 244 ccataccgccaggtgggagtctggatgtgagaagccacggaactccattctgcatgggta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccataccgccaggtgggagtctggatgtgagaagccacggaactccattctgcatgggta 503

                                                                       
Query: 304 gagagggagcattctgaggtccctgggcctcaccgagtccagaggcaaggttctagctct 363
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 gagagggagcattctgaggtccctgggcctctccgagtccagaggcaaggttctagctct 563

                                                                       
Query: 364 tgaacatcacagcacccgcacaccacagaagagctgtacaccgcagaagaggtgcgggat 423
           |||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaacatcacaggacttgtacaccacagaagagctgtacaccgcagaagaggtgcgggat 623

                                                                       
Query: 424 ggttggaggcttagtcagccccaggccgaagagaataagggtagggggagaaggcactgt 483
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 ggttggaggctcagtcagccccaggccgaagagaaaaagggtagggggagaaggcactgt 683

                                                                       
Query: 484 gtggttcccacacaggtgaaaacctttgttccggtttggaggctggaaatgctgggaggc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtggttcccacacaggtgaaaacctttgttccggtttggaggctggaaatgctgggaggc 743

                      
Query: 544 cttcctgctgg 554
           |||||||||||
Sbjct: 744 cttcctgctgg 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)