BAC Information

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BAC

Clone NameMSMg01-325B11
Chromosome6 (Build37)
Map Location 97,307,022 - 97,485,987
singlet/doubletdoublet
Overlap geneFrmd4b
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
Downstream geneLOC641241, LOC100043692, Mitf, Gm765, LOC666019, LOC665963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325B11.T7 (MSMg01no325_b11.b1)MSMg01-325B11.TJ (MSMg01no325_b11.g1)
ACCAG443067AG443068
length734732
length of high quality
(start - end)
643 (45 - 687)243 (73 - 315)
definitionCHROMAT_FILE: MSMg01no325_b11.b1 PHD_FILE: MSMg01no325_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:33 2005CHROMAT_FILE: MSMg01no325_b11.g1 PHD_FILE: MSMg01no325_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,485,680 - 97,485,987)(97,307,022 - 97,307,263)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACCCATCTCCACCCAATAGATCCTTTGCAGCTTCACGCTCAGTC
TGAATCCTATACAACCTCCACAGTTCCACAGAGAACGATCCAAGTTGCAT
GGTGGCCTAGTTTGCTTCCTATTGCTGTGATAAACAATGGCCCAGAGCAA
CTTAGTTTATGGATAATTGCATTAGTTATCTTCCTATTGCTGTGACAAAA
CACCGTGACCAAGACGACTATAAAAGAAAACATTTAATTGGGCTTACCAT
TGCACGGGTTAGAATCCATGATGGCAGAGCACAGGAGTGGTAGTAGGAAT
GGCTCTGAGTTCACATCTTGATCTGAAGGCAGAAAGCAGGGAAAGCATAC
TCGGTATGGGAGTGGGGTGGAAACCTCTCTTGAAACCTCAGAGGCCTTCT
CCCAGTGACACACCTCTTCCAGCAAAGCCACTCCTCCTGGTCCTTCCCAA
AACGTTCCACCAACTGGGAACCAAGTATCAAACATATGAGCCTACGGGGC
CATTTTCCTTCAAACCACCATAGTGATAGCCTGTCATCTAGGGAAGTAAG
GGAAGGAACCTGGAGGCAAAAAATTAAAGCAGGGATCACAGAAGGATGCT
GCTTCCTGGCTTGCTTCCTGGAACTGCCCTCCTCAGTCAGTCAGAAACTA
AGATAATGTGCTATAGACATGCCAACAGGCCAAN
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGGTTCCACAATTAAGGGGATGAATAA
AAGAAAAGTCCTAGGACCAGAAAGGGAATACAGTGAAATAGGACCCAATG
GGTTCAGTCAACACTGAAGATCAGAGGGATGGCCTGTAGCTTCCAGTCTC
CTCACATGTGGCTCTGGCCTTCCTGGCCTGTGTTCTTCCCGCTCTATCTG
CACAGCTAACTTAAAACTTCATTACCCAATCACTCTCCCAGCAATCTTCC
GAAGGCATGCTTTGTGTAATAAGTGGGTTCAGGCAAGGCAGTGCAAAATG
ACCCCAAATGTTGTCTCCATCAATGATGAAGCTATAGGTTATCAACAAAC
ACACATTCTATACCACGGCAGGAAATCAGGTCTGAGGCCTCACTCTGCTC
AGCTCAGACGGATGTTATATTTCATGGAAACTTATTCTACACCAGAGCAA
TGGATATTAACAATCTGTTGTCAACTGGTAAACTGTTGGCACAAGTCAGT
GTGCTTCCCAATCTATTGCTAGTTATCTATTTTAAGAATACCTTTAGGGG
CTGGCGAGATGGCTCAGTGGGTAAGAGCACTGAGTGCTCTTTCCAAGGTC
CAGTGTTCTAGTCCCAGCATCCAAATGGGTGGCTCAAACCATCCGTAACA
AGATATGAAGCCCTCTTCTGGTGTGTCTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_b11.b1 MSMg01no325_b11.b1 CHROMAT_FILE:
MSMg01no325_b11.b1 PHD_FILE: MSMg01no325_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:33 2005
         (643 letters)



>mm_chr6_97485680_97486722
          Length = 1043

 Score =  572 bits (296), Expect = e-167
 Identities = 305/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctacccatctccacccaatagatcctttgcagcttcacgctcagtctgaatcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 308 ggaattcctacccatgtccacccaatagatcctttgcagcttcacgctcagtctgaaccc 249

                                                                       
Query: 64  tatacaacctccacagttccacagagaacgatccaagttgcatggtggcctagtttgctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tatacaacctccacagttccacagagaacgatccaagttgcatggtggcctagtttgctt 189

                                                                       
Query: 124 cctattgctgtgataaacaatggcccagagcaacttagtttatggataattgcattagtt 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 188 cctattgctgtgataaacaatggcccagagcaacttagtttatagataattgcattagtt 129

                                                                       
Query: 184 atcttcctattgctgtgacaaaacaccgtgaccaagacgactataaaagaaaacatttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atcttcctattgctgtgacaaaacaccgtgaccaagacgactataaaagaaaacatttaa 69

                                                                       
Query: 244 ttgggcttaccattgcacgggttagaatccatgatggcagagcacaggagtggtagtagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ttgggcttaccattgcacgggttagaatccatgatggcagagcacaggagtggtagtagg 9

                   
Query: 304 aatggctc 311
           ||||||||
Sbjct: 8   aatggctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no325_b11.g1 MSMg01no325_b11.g1 CHROMAT_FILE:
MSMg01no325_b11.g1 PHD_FILE: MSMg01no325_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:33 2005
         (243 letters)



>mm_chr6_97306822_97307464
          Length = 643

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggttccacaattaaggggatgaataaaagaaaagtcctaggaccagaaagggaataca 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggttccccaattaaggggatgaataaaagaaaagtcctaggaccagaaagggaataca 260

                                                                       
Query: 61  gtgaaataggacccaatgggttcagtcaacactgaagatcagagggatggcctgtagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaaataggacccaatgggttcagtcaacactgaagatcagagggatggcctgtagctt 320

                                                                       
Query: 121 ccagtctcctcacatgtggctctggccttcctggcctgtgttcttcccgctctatctgca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ccagtctcctcacatgtggctctggccttcctggcctgtgttcttcccgctccatctgca 380

                                                                       
Query: 181 cagctaacttaaaacttcattacccaatcactctcccagcaatcttccgaaggcatgctt 240
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctaacctaaaacttcattatccaatcactctcccagcaatcttccgaaggcatgctt 440

             
Query: 241 tg 242
           ||
Sbjct: 441 tg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)