Query= MSMg01no325_j13.b1 MSMg01no325_j13.b1 CHROMAT_FILE:
MSMg01no325_j13.b1 PHD_FILE: MSMg01no325_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:07 2005
(606 letters)
>mm_chr6_86507466_86508471
Length = 1006
Score = 1127 bits (583), Expect = 0.0
Identities = 598/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 5 gaattctcgattaaaggaggtgtctcatgattttaacctatagtcatgagataatatttg 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcgaaaaaaggaggtgtctcatgattttaacctatagtcatgagataatatttg 263
Query: 65 ctcagtgtatacatgtttaacaaagatggcatggagggaaggagactgccagagaaggat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcagtgtatacatgtttaacaaagatggcatggagggaaggagactgccagagaaggat 323
Query: 125 tagtgcctggtttttctctgacttacttatggcttgtgcccttctcagtagatattttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagtgcctggtttttctctgacttacttatggcttgtgcccttctcagtagatattttct 383
Query: 185 tctgagtatgttggaggcctggtgtgtgcgtgtgttgtctgcctactgaaagaccacaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgagtatgttggaggcctggtgtgtgcgtgtgttgtctgcctactgaaagaccacaga 443
Query: 245 gggagcagaagtcagacagactgaggccctggtcttgtactatgcagagactcctgtctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggagcagaagtcagacagactgaggccctggtcttgtactatgcagagactcctgtctt 503
Query: 305 ttttttttt-aaagatttatttattattatatctaagtacactgtagctgtcttcagatg 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttttttttaaagatttatttattattatatctaagtacactgtagctgtcttcagatg 563
Query: 364 caccacaagagggcatcagatctcattacggatggttgtgagccacctcgtggttgctgg 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caccagaagagggcatcagatctcattacggatggttgtgagccacctcgtggttgctgg 623
Query: 424 gatttgaactcaggacctctgggagagcagtcggtgctcttaaccactgagccatctctc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gatttgaactcaggacctctgggagagcagtcggtgctcttaaccactgagccatctctc 683
Query: 484 cagcccaagactcctgtcttacagcttaggaggatcgagtttctctctagatgaagcctg 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagcccgagactcctgtcttacagcttaggaggatcgagtttctctctagatgaagcctg 743
Query: 544 cataaatagtggtcagcagagcagctgtaccgtgatgaaccttgctctcagttcagtaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cataaatagtggtcagcagagcagctgtaccgtgatgaaccttgctctcagttcagtaag 803
Query: 604 tag 606
|||
Sbjct: 804 tag 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_j13.g1 MSMg01no325_j13.g1 CHROMAT_FILE:
MSMg01no325_j13.g1 PHD_FILE: MSMg01no325_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:08 2005
(583 letters)
>mm_chr6_86667414_86668396
Length = 983
Score = 905 bits (468), Expect = 0.0
Identities = 487/498 (97%), Gaps = 8/498 (1%)
Strand = Plus / Minus
Query: 94 ctcagtgcctccctgcccagttcattctcagcttcagatggtcagtgggctaattgctgg 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 ctcagtgcctccctgcccagttcattctcagcttcagatggtcagtgggctaattgctgg 924
Query: 154 attcttttttcaacatttctattggacctataaaaaacttaggctaactccagttaatga 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 attcttttttcaacatttctattggacctataaaaaacttaggctaactccagttaatga 864
Query: 214 a--------tttccttccttccttccttccttccttccttccttccttccttccttcctt 265
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 atttccttctttccttccttccttccttccttccttccttccttccttccttccttcctt 804
Query: 266 ccttccttccttccttccttgctattttgatttggttttacatcttagtaagaaagcatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccttccttccttccttccttgctattttgatttggttttacatcttagtaagaaagcatg 744
Query: 326 acatgagagctgaccccccaggcaaaatggcctttctagtgcttgtttatatttacagga 385
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 743 acatgagagctgattccccaggcaaaatggcctttctagtgcttgtttatgtttacagga 684
Query: 386 tggtttgatacagcagtgcggtgagacaatgaaggagaccatctctgtgagaactgtgtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggtttgatacagcagtgcggtgagacaatgaaggagaccatctctgtgagaactgtgtg 624
Query: 446 tggctattacacatcggcagggacctatggactagactctgtaaagaaaaagtgagccac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggctattacacatcggcagggacctatggactagactctgtaaagaaaaagtgagccac 564
Query: 506 ctttcctgtttctttcccaccccacttctggggcttcagctgttttggagtcttacgaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttcctgtttctttcccaccccacttctggggcttcagctgttttggagtcttacgaga 504
Query: 566 atgtaataaagaattagt 583
||||||||||||||||||
Sbjct: 503 atgtaataaagaattagt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
