BAC Information

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BAC

Clone NameMSMg01-326J22
Chromosome6 (Build37)
Map Location 85,864,555 - 86,038,502
singlet/doubletdoublet
Overlap geneCml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
Upstream geneExoc6b, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik
Downstream geneTgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326J22.T7 (MSMg01no326_j22.b1)MSMg01-326J22.TJ (MSMg01no326_j22.g1)
ACCAG444194AG444195
length727736
length of high quality
(start - end)
371 (50 - 420)344 (80 - 423)
definitionCHROMAT_FILE: MSMg01no326_j22.b1 PHD_FILE: MSMg01no326_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:21 2005CHROMAT_FILE: MSMg01no326_j22.g1 PHD_FILE: MSMg01no326_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,864,555 - 85,864,920)(86,038,160 - 86,038,502)
sequence
NGTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCTCTTACTAGACCAGAAGTCATTCCGACAACCAACCAGGTGC
ACGGTGTCAGGATGTCATCTTTCATATGACACAGATCTCAGAGTTGCTAC
TGATAGTGAAGAATGATTGGGGACAGATAGGGACACTTTCATATTCTGGA
TTATGAAGACACACTTGTACTTCACACTGAGGAAAGGAAACGAAACGGAC
ACCCTCTCATTTGTTTTGAATTAACCTCCCAGGTATCTCTGTAGGGGTGT
AAGGTCGATTATCAGTAGAAATTAATTAGATTCTGAGTTCCAATGTGCCT
GTGTCCAAACACCTGCAGACGAGGAGAAAGCCAAGAAAGTAAGAAGCAAA
CATCATATGAGAAGTGTCCCCACGTTGACCATCTGGCCAGAGAGGCAAAA
CAAAACGGAGCTCCAGGATTATTGGCTGTCTTTGCCTATGGCCCTATCTC
CTCCTTATATATTCTGCTGGGTGAAGATGGCAGGGAATGCATGTCTGTAG
GGTAATTAACCTACTATTTCAGACTGCAGGTTCTCTCTGGATAAACTAAT
TTTAAGATTCAAGCTCTTTATTCATTGGGTTCTCTTGACAGGTAGCAAGG
ACTAAAATCCGGACTCACTATCTTGGTGGTCACCCTTCACCGTGAGCAGT
ACCCTGGTCTTGTATAATTCCCTGAGG
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACTCCTCTACAAAGTCAAT
CCCAACACAACTCCAACCAAAATCCTAGAAGGATTATTTTAAGGCAGAGG
AGAATAAATAGAGCTTGACAAAGTAACTCCAAAATTACTTTATAGAATAA
ATTTGCCCAAGAGATTAAGATAAATTGGTGATTAGCTATGGCCCTTTGAC
CTATTATCTAGGCAGGTGGCCAGCAGTGGAAGACACAAAGGAAAATAACA
GAGGCTCTGTTCTGTAACAATGTATTCTACAATATAACAAATGCTATGAG
CAAAATTAAAAGTCAAAAGAGAAAATGAGAAATGATTGTAATATTTTTGA
CAGGTTGTAGGGAAATAGCATACACCCACCACGATTTAAAAACCTATCCA
CAGCCCACTAATAGGAAAACTGGCAAAGCATGGGAACAGACATTTTGCTA
TAAAAAAGCACAGATGAAGGCTTAGGTACAGCCTGTCTCAGGGGGAAGGG
AGGAACAGCAACTAACAGTCTGAGCCGAGGTGGAAGCAGGGCCACGCCCA
CCACACTCTGTTGAGAGCAAGGTTGGCAAATCTCTTTCTCCGGTATGGTG
AAGGGACAGAATCTGCTTTGTGCAATGCTTCCTAGCTCCTATTTGCATTC
TTTCAGCCATTCTTACAATTTATCTTCAGAAGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_j22.b1 MSMg01no326_j22.b1 CHROMAT_FILE:
MSMg01no326_j22.b1 PHD_FILE: MSMg01no326_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:21 2005
         (371 letters)



>mm_chr6_85864351_85865121
          Length = 771

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttactagaccagaagtcattccgacaaccaaccaggtgcacggtgtcaggat 64
           |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttacaagaaaagaagtcattccgacaaccaaccaggtgcacggtgtcaggat 264

                                                                       
Query: 65  gtcatctttcatatgacacagatctcagagttgctactgatagtgaagaatgattgggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcatctttcatatgacacagatctcagagttgctactgatagtgaagaatgattgggga 324

                                                                       
Query: 125 cagatagggacactttcatattctggattatgaagacacacttgtacttcacactgagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagatagggacactttcatattctggattatgaagacacacttgtacttcacactgagga 384

                                                                       
Query: 185 aaggaaacgaaacggacaccctctcatttgttttgaattaacctcccaggtatctctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggaaacgaaacggacaccctctcatttgttttgaattaacctcccaggtatctctgta 444

                                                                       
Query: 245 ggggtgtaaggtcgattatcagtagaaattaattagattctgagttccaatgtgcctgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggtgtaaggtcgattatcagtagaaattaattagattctgagttccaatgtgcctgtg 504

                                                                       
Query: 305 tccaaacacctgcagacgaggagaaagccaagaaagtaagaagcaaacatcatatgagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccaaacacctgcagacgaggagaaagccaagaaagtaagaagcaaacatcatatgagaa 564

                 
Query: 365 gtgtcc 370
           ||||||
Sbjct: 565 gtgtcc 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no326_j22.g1 MSMg01no326_j22.g1 CHROMAT_FILE:
MSMg01no326_j22.g1 PHD_FILE: MSMg01no326_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:21 2005
         (344 letters)



>mm_chr6_86037960_86038703
          Length = 744

 Score =  656 bits (339), Expect = 0.0
 Identities = 342/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactcctctacaaagtcaatcccaacacaactccaaccaaaatcctagaaggattattt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caactcctctaccaagtcaatcccaacacaactccaaccaaaatcctagaaggattattt 484

                                                                       
Query: 61  taaggcagaggagaataaatagagcttgacaaagtaactccaaaattactttatagaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taaggcagaggagaataaatagagcttgacaaagtaactccaaaattactttatagaata 424

                                                                       
Query: 121 aatttgcccaagagattaagataaattggtgattagctatggccctttgacctattatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatttgcccaagagattaagataaattggtgattagctatggccctttgacctattatct 364

                                                                       
Query: 181 aggcaggtggccagcagtggaagacacaaaggaaaataacagaggctctgttctgtaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aggcaggtggccagcagtggaagacacaaaggaaaataacagaggctctgttctgtaaca 304

                                                                       
Query: 241 atgtattctacaatataacaaatgctatgagcaaaattaaaagtcaaaagagaaaatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 atgtattctacaatataacaaatgctatgagcaaaattaaaagtcaaaagagaaaatgag 244

                                                      
Query: 301 aaatgattgtaatatttttgacaggttgtagggaaatagcata 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaatgattgtaatatttttgacaggttgtagggaaatagcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)