BAC Information

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BAC

Clone NameMSMg01-328G06
Chromosome6 (Build37)
Map Location 32,050,933 - 32,051,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream genePlxna4, Chchd3, LOC100039118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328G06.T7 (MSMg01no328_g06.b1)MSMg01-328G06.TJ (MSMg01no328_g06.g1)
ACCAG445500AG445501
length874731
length of high quality
(start - end)
159 (70 - 228)327 (76 - 402)
definitionCHROMAT_FILE: MSMg01no328_g06.b1 PHD_FILE: MSMg01no328_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:32 2005CHROMAT_FILE: MSMg01no328_g06.g1 PHD_FILE: MSMg01no328_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCATAGCATTTCTTCGGGGAGAAGAGGGTTTGGGGTCCTTCGATCATC
TTTACTCTTTTCTAAAGCACTGGCTGCTTTCTGCTATTTAAACCAGTTTT
TACCTTTCAAAATAATGTATTTACATTCTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTTGTGTTCCTATCTTCTCACAATTTC
TCATTTTTATACTTCTACCATATCTTTTATATATTTACATTCTCTAAATT
ATCAATACAAACCTATCTTTTTTTTTTTTATCATATAATATCCAACCCAT
TTTATTTCACATCTATTCTTACCCCACTCCTCAAAACCAAATTTTATCAC
CATTTATATAATTTATAACAAATTTTTTTCCCCCCCCCCAATTCTATTTT
TTTTTTTTTCCTTTCTCTATATTTTTATTTTGATATTTTTTCCTACTCTT
ATTTCCTTCCGCTTAATATTATCATCCTACAATACATTATATCAAACTTT
TATATCTTTATATATTCTCAATCTAACATATTTATATTTTCTCTCTTCTA
TATCTTATTCTTCTCACTTTTATATTATATATCATAATATATCTATTCAA
CTCTCTCATTTCATCTTTATCTATCTTTTCATTTATATCTATCTTCATTC
TACTTTTTACTTAACCTCTAGTCTTTTTTCACCCCTTTCTCTTCATTACC
TCCTTTCTCATTCCTTTTCTATTTACACCTCTACACTCCTTTTTTTTAAT
CAACACTCTCATATTATCTTGACTCTTAATAATCTAATAACCTCTCCAAC
TCCTTACATACTAACAATTCCTTT
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGCAGAGCTTTGATGCATCATTAG
CACCCAGAACCAACAGTTCATGCTGGAGTTCCTCTTTGCTGGTATGTGTC
TGATGGATCTAGATGAACATGTAATGGCATGCAGTCTTCAAGCTGATGCC
ATACAGGATAACTTCATTGCCCTAACAGTCCTCTGGCTCATCTTCCTCAT
TCTTCCTTCCTCTACCCAGAAGGACACGTACTTGGAATCATACAGCCTGT
CGTCTTTTCAATTACAGTACCTTGTGTTTAAAGCTCCTCCATGTCTTTGT
CTGAATTGAAAGCACATTTGCTTGTAGTCTTAAACAGTATTCCTTTATCA
AGCTGTGTCTGTATCTTCACCCAGTCTTCCAAGATAAGCATCTTCATTGT
CTCTAGTGTGCTCACAGATGAATACCTATGTTTTAAACACCCATGCGCAT
CTAGTTCTGGATTTCATTTCCACTTGTTCAGCTAGGCTGCCTGCTCTCCA
CCTGGCTATGAACCCCGATGAATTTACTTCTTGCTGAGTACACATGTACT
GAAAGATCTACAGGGTTCCTTTCTCTATATGCTAACATTCCACATTACGC
ATCTGATCCCTTTATTTATAGATATATCCTCCAACCTGATGCTTCCATAA
TTTAAGTCCATCATGCTTTAACCATCCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_g06.b1 MSMg01no328_g06.b1 CHROMAT_FILE:
MSMg01no328_g06.b1 PHD_FILE: MSMg01no328_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:32 2005
         (159 letters)



>mm_chr6_32050733_32051291
          Length = 559

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagaagagggtttggggtccttcgatcatctttactcttttctaaagcactggctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagaagagggtttggggtccttcgatcatctttactcttttctaaagcactggctgctt 260

                                                                       
Query: 61  tctgctatttaaaccagtttttacctttcaaaataatgtatttacattctgtgtgtgtgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tctgctatttaaaccagtttttacctttcaaaataatgtatttacattctctgtgtgtgt 320

                                               
Query: 121 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)