Query= MSMg01no329_f16.b1 MSMg01no329_f16.b1 CHROMAT_FILE:
MSMg01no329_f16.b1 PHD_FILE: MSMg01no329_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:46 2005
(327 letters)
>mm_chr6_46646700_46647426
Length = 727
Score = 590 bits (305), Expect = e-173
Identities = 317/321 (98%)
Strand = Plus / Plus
Query: 7 ggaattcagcttgttgcgcatcatggaattttaatcatagaaggatagcaaggaaggggc 66
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcagcttgaagtgcatcatggaattttaatcatagaaggatagcaaggaaggggc 266
Query: 67 aaacctcattagtggtccaataaggaaacatatgaggggtctcatgtaaatgggactcct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaacctcattagtggtccaataaggaaacatatgaggggtctcatgtaaatgggactcct 326
Query: 127 caaactctgcagtaaactgaacagcactgggaaaaggccacgttcaaaatgcaagccctg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caaactctgcagtaaactgaacagcactgggaaaaggccacgttcaaaatgcaagccctg 386
Query: 187 tgcatgcatgcatcctctcaaagttactcttcccaccagccaccattaatgccatcaatc 246
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 387 tgcatgcatgcatcctctcaaagttactcttccaaccagccaccattaatgccatcaatc 446
Query: 247 tgcctcattgtgacctacctttcctgacttactaataacttctgtacccacatcttcatc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgcctcattgtgacctacctttcctgacttactaataacttctgtacccacatcttcatc 506
Query: 307 cccattgcctttcatgtaggt 327
|||||||||||||||||||||
Sbjct: 507 cccattgcctttcatgtaggt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_f16.g1 MSMg01no329_f16.g1 CHROMAT_FILE:
MSMg01no329_f16.g1 PHD_FILE: MSMg01no329_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:46 2005
(493 letters)
>mm_chr6_46807872_46808767
Length = 896
Score = 636 bits (329), Expect = 0.0
Identities = 454/507 (89%), Gaps = 33/507 (6%)
Strand = Plus / Minus
Query: 1 ttggactttccatcaggagatggccgttattgaactactcagaccataacctttaagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 840 ttggactttccatcaggagatggccgttattgaactactcagaccataatctttaagcta 781
Query: 61 tcctaaaaaattctctatattctctctctct---tcataat-tgtaatacacaatacaca 116
||||||||||||||||| ||||||||||||| || | | | | | | | |
Sbjct: 780 tcctaaaaaattctctacattctctctctctctctc----tctct----ctc--t-ctct 732
Query: 117 ctatagtttttaat-tctat-tatt-atatgtgtattat---aattttaatttctattag 170
|| | | | | | ||| | | || ||| ||||| ||||||||||||||||||
Sbjct: 731 ctct-ctctct-ctgtctgtctcttcata-----attataacaattttaatttctattag 679
Query: 171 tccttttcctctagagaacccaggctaatacagttttggatagaaacttaaatgaacatt 230
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 678 tccttttcctctagagaacccaggctaatacagtcttggatagaaacttaaatgaacatt 619
Query: 231 tattattatttaacatgtattagtcattatcttttcac---tattaagatagagtctagg 287
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 618 tattattatttaacatgtattagtcattatcttctcacttttattaagatagagtctagg 559
Query: 288 ttg-gaaaaatgcctcaacagataatatacttgctatgaaggcatgagggccagcccagc 346
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 558 ttgaaaaaaatgcctcaatagataatatacttgctatgaaggcatgagggccagtttagc 499
Query: 347 ttcctagaacccatcttaaaagatggggcatgactatgtatacctgtaaccgcagtggtg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttcctagaacccatcttaaaagatggggcatgactatgtatacctgtaaccgcagtggtg 439
Query: 407 gggtgcccagacagacaggtaaatcccagggactcgctggttacctaggctagccacaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gggtgcccagacagacaggtaaatcccagggactcgctggttacctaggctagccacaac 379
Query: 467 agtgagtgccattgttcagggagagac 493
||||||||||| |||||||||||||||
Sbjct: 378 agtgagtgcca-tgttcagggagagac 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 896
Length adjustment: 10
Effective length of query: 483
Effective length of database: 886
Effective search space: 427938
Effective search space used: 427938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
