Query= MSMg01no329_n23.b1 MSMg01no329_n23.b1 CHROMAT_FILE:
MSMg01no329_n23.b1 PHD_FILE: MSMg01no329_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:29 2005
(593 letters)
>mm_chr6_94871457_94872452
Length = 996
Score = 1087 bits (562), Expect = 0.0
Identities = 582/590 (98%), Gaps = 3/590 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaacctcagagagctctgacattatcacccagttctcagctgctctaatttcaa 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ggaattcaacctcagagagttctgacattatcacccagttctcagctgctctaatttcaa 734
Query: 64 gtcctagccctaatttttataacttatcttttaaaaatatttctgtacaaacatgtaatg 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 733 gtcctagccctaatttttataacttatcttttaaaaatacttctgtacaaacatgtaatg 674
Query: 124 taagttaactttaacattttttcgaacactagcaattgaacatcccacctatgccccatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 taagttaactttaacattttttcgaacactagcaattgaacatcccacctatgccccatc 614
Query: 184 tgaaggtaacaataataaagattctgatgtgtatatgtatccaatttcatttccacattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgaaggtaacaataataaagattctgatgtgtatatgtatccaatttcatttccacattt 554
Query: 244 attctactataaacatgaaaggcatgagtcatgtccagttgcagctggcagttacagtgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attctactataaacatgaaaggcatgagtcatgtccagttgcagctggcagttacagtgt 494
Query: 304 gcaaggtaaagttacacaagaatcaggacaaaggagggtttgtgctgtgggatctacaga 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcaaggtaaggttacacaagaatcaggacaaaggagggtttgtgctgtgggatctacaga 434
Query: 364 ccaactccagacaccaccatggctgtgcccatgtgtcgtcagagtttgctcttgacttct 423
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccaactccagacagcagcatggctgtgcccatgtgtcgtcagagtttgctcttgacttct 374
Query: 424 ggcttagtgttcctccacattgtcttctatcccagtagccaagactgtcacactatttat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcttagtgttcctccacattgtcttctatcccagtagccaagactgtcacactatttat 314
Query: 484 tactcaagcc---tttcaaggggaacaaaactcttttacataagcccacactttccaagt 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tactcaagccttttttcaaggggaacaaaactcttttacataagcccacactttccaagt 254
Query: 541 taaacttctaatatccttaatgcactcacacccacccatcccccacacac 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taaacttctaatatccttaatgcactcacacccacccatcccccacacac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 996
Length adjustment: 10
Effective length of query: 583
Effective length of database: 986
Effective search space: 574838
Effective search space used: 574838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_n23.g1 MSMg01no329_n23.g1 CHROMAT_FILE:
MSMg01no329_n23.g1 PHD_FILE: MSMg01no329_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:29 2005
(326 letters)
>mm_chr6_94711904_94712628
Length = 725
Score = 553 bits (286), Expect = e-162
Identities = 311/326 (95%), Gaps = 12/326 (3%)
Strand = Plus / Plus
Query: 1 attcccattttaagtaatgtttacattaccctgtcacaccatagggaaggggatggggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccattttaagtaatgtttacattaccctgtcacaccatagggaaggggatggggtg 260
Query: 61 gaatgttaaaaaaaaaaaaaaaaagaaatgaggttcaatattgaagggagtagccattta 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgttaaaaaaaaaaaaaaaa-gaaatgaggttcaatattgaagggagtagccattta 319
Query: 121 aaatagaggtaccgggaccatgaaacaaagtcaattcccccatttgatagctccgtggcc 180
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaacagaggtgccgggaccatgaaacaaagtcaattcccccatttgatagctccgtggcc 379
Query: 181 tttttgtcccccaagttttgctttcgcaggaccttcacggggtagtccttttaggtctct 240
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 tttttgtcccccaagttttgctttcgcagg-----------gtagtccttttaggtctct 428
Query: 241 gctgcaatgtcacttccttaggggttaaccctatgcgcgccatcatcacacacagtcatt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 429 gctgcaatgtcacttccttaggggttaaccctatgcgcgccatcagcacacacagtcatt 488
Query: 301 ggcttgttttcataaagactctagct 326
||||||||||||||||||||||||||
Sbjct: 489 ggcttgttttcataaagactctagct 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space: 226972
Effective search space used: 226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
