BAC Information

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BAC

Clone NameMSMg01-330H18
Chromosome6 (Build37)
Map Location 149,204,994 - 149,205,229
singlet/doubletsinglet
Overlap genenone
Upstream geneTmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik
Downstream gene2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330H18.T7 (MSMg01no330_h18.b1)MSMg01-330H18.TJ (MSMg01no330_h18.g1)
ACCAG447029AG447030
length749740
length of high quality
(start - end)
---237 (128 - 364)
definitionCHROMAT_FILE: MSMg01no330_h18.b1 PHD_FILE: MSMg01no330_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:12 2005CHROMAT_FILE: MSMg01no330_h18.g1 PHD_FILE: MSMg01no330_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAAAGGCTTTCCCAGAATTATATAATAGCCAGTGTAACATTCTCCAGT
ATGATTTCCTTTCTCTGTGACCCCCACATGCATGCTCTGAGGAAGATTTT
AGTTTTGTAGAAAGAGTGTTTCTAATCAGACTTAATGGCATATTATTTCC
TCTATCATGTATCAAGTTTAAAGGTATGATATACTATGTTTTACCTATAA
GAAAGATATTTTGAGTGAAAAGATAATATATTTCTATATATCATACACAC
GTCAACATTGCTGAAGACTACAGGTAAGTTCCAGCAGTTGTCTTAATTTA
TCTTTCCTTTTATTTTATGTGTACCACCCCTCCCATACTTTGTATATTCT
TCTTTTACCCACACTTTACCCCCCTCTCAGAAATTATGGTTTTACCCACT
ATCTCTAGATAGTACTGCAACAAGGATTCACGGGGAAGCAGAATTTGAGC
CTATTTTCCCTTTGTTTCTTCTTTGCTCCTGGCTACTAGCATCCTGAAAC
CAATCTACCTTGATGACTGGCAAAACTATGCTTCTGGTACAGCATGATAC
AAATCATAGTCATCTGCTGCGGACAGTCGACAGGTGCCTCACATCCCTAC
ACCTAGTATTATTATGAAAACTTTTTCTTACCACATTTTGTTTTATTGAA
TATTCCGGAATTGTCTTCTCCTATGCGTATAGATGACTTTGCCTTCCTN
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGACCTCTGGAAGAGCAGTCAGTG
CTCTTAACCATGGAGCCATCTCTCACACCTATCTTTTTTTTTTTTTTCTT
TAATCTTCACTCCCTCACTTGAGACTATTGACTGAGCAGGCTTGGCCAGC
TAAATCCCATCTCCAGACCCAAGTTCTCAGCGAGCTTAAATAGCCCAAGA
TAGTGAGCTTAAATAACACAACCTATCACTAAGCATATGGATCAGACTGT
CTTTGTGTTCTAGACAGGATTTAGGGAACCTCTCAGTAGAAAAGAGGGCA
CAGATGTCAACTATTTTATTTGTGCCCCCCCCCCGCCGAGCGGGGTCTAG
TATGTTCTTGAAATGTATAAAGTTTGTGAAAAGGAAAAGTGTTTTTAAGA
AAGCCAGTCTAGTGGTATTTGCATTTGAGTGGTATCATCAATCATGAGGT
TGAATGTTGATATTACAGAGACCATTACTCCTTGTGACGGTTGCCACTGC
AACCAAACAAAAGGGCAACGATTTAAATAGCAATTCAACTTAAGAGGCAA
TTTGAAGCACACTGACCCAAAACAAAGGGTTTTTCCAGCTACAGTGATGA
GGATGGCCACTTGGGAACTATGTTTTCTAGTTGTTTAGAAAAAGTGCTCC
AAATGGGGCATGTGAAACTGCTTTCATAAAGAGCTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_h18.g1 MSMg01no330_h18.g1 CHROMAT_FILE:
MSMg01no330_h18.g1 PHD_FILE: MSMg01no330_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:12 2005
         (237 letters)



>mm_chr6_149204794_149205430
          Length = 637

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctatcttttttttttttttctttaatcttcactccctcacttgagactattgactgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatcttttttttttttttctttaatcttcactccctcacttgagactattgactgagc 260

                                                                       
Query: 61  aggcttggccagctaaatcccatctccagacccaagttctcagcgagcttaaatagccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcttggccagctaaatcccatctccagacccaagttctcagcgagcttaaatagccca 320

                                                                       
Query: 121 agatagtgagcttaaataacacaacctatcactaagcatatggatcagactgtctttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatagtgagcttaaataacacaacctatcactaagcatatggatcagactgtctttgtg 380

                                                                   
Query: 181 ttctagacaggatttagggaacctctcagtagaaaagagggcacagatgtcaacta 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctagacaggatttagggaacctctcagtagaaaagagggcacagatgtcaacta 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)