BAC Information

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BAC

Clone NameMSMg01-331L12
Chromosome6 (Build37)
Map Location 74,660,162 - 74,660,352
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331L12.T7 (MSMg01no331_l12.b1)MSMg01-331L12.TJ (MSMg01no331_l12.g1)
ACCAG447944AG447945
length819742
length of high quality
(start - end)
195 (71 - 265)599 (76 - 674)
definitionCHROMAT_FILE: MSMg01no331_l12.b1 PHD_FILE: MSMg01no331_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:39 2005CHROMAT_FILE: MSMg01no331_l12.g1 PHD_FILE: MSMg01no331_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCANCACGAGACCGCGG
AATTCCAGGATTACTGACATTACCGTGTATACTGTATCTTTTTTATGATG
TATGAGAACACAGACAAAGTTATCAAGCTAAAGCATTTCCTACTATACAA
AAATCTTTAATGCCAGCAAAGATTGCAACAGTTTTAACAAAGGCAACTGT
GGTTGATGACTTANAAGTTGGTCTCTATTTTANANATCATTTTATTGTTG
AATAATGTGAANTAATTGNCACAAATGTGTTGACAGTAAATAAAGGAGGA
AATGGNAANNAAAGACTATCTAAATCCTGAAACTCATTTGGTAATGGANN
NANGGNTGACTGGTGAGTAATCTAATTAAAAAAAAAACCCTTCTTCCCAG
TATAAAGTTCCCAGCCCCCCCAAAAAAAAAACAAAANGGTTTTTTTTTAT
TTNTCTATTCACCAACCCCCCTTNCCCCCTTCCCCCCCCGAGATACCCAN
AAACACCCCCCAATATAAATTTTTATTNNTAAATTATCTCTATTTCTTCA
CTTATCCTCTCTTATTTTTCCTCTCCTCTCTCTCCCCTTTTATTATTATT
CTCTCTCTCCCCCCACACCACCCCCCCTTTCTCGTTTGACAACNNNCTTC
TATCCTTCTAATCCCCCCTCTTCTCTCCCTTTTCCCTCTTTCTCTTTTCT
CCTTTAAACCCNCNNNATAATAACTAATACCNNANANGACTCTCCTTTTT
TTATTTCTAGGGGTGAGGGGGCCCGGTTCTNTTTACCTTCTTTCTTTCCT
TTTNTAGTTTTNTTCTTCA
GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGAATATGTACTCACTGATGAGT
GGGTATTAGCTCAGAAACTTAGGCTACCGAAGATATAAGATACAATTTGC
TAAACTCATGAAACTCAAGAAGTACAAAGACCAAAGTGTGGACATTTTGC
CCCTTCTTAGAATTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACA
AAGTTTGGAGCTGTGACAAAAGGATGGACCATCTAGACACTGCCATATCC
AGGGATCCATCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACAC
TAGCACGATTTTCCTGAAAGGTCCCAGATAGAGCTGTCTCTTGTGAGACT
ATGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTAAGCTATTGG
ATGGATCACACTGCCCCAATGGAGGAGCTATAGAAAGTACCCAAGGAGCT
AAAGGGATCTGCAATCATATAGGTGGAACAACAATATGAACTAACCAGTA
CCCCCCTGGAGCTCATGTCTCTAGCTGCATATGAATCAGAAAATGACCTA
TTTGGCCATCAGTGGAAAGAGAGTCCCATTAGTCGTGAAAACTTTATATG
CCTCAGTACAGGGAAACGACAGGGCCAAGATATGGCAGTGTCTGGATGCG
GTGTGGATTGGGGAGCATGTGGGGGACTTTTGGGTTACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_l12.b1 MSMg01no331_l12.b1 CHROMAT_FILE:
MSMg01no331_l12.b1 PHD_FILE: MSMg01no331_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:39 2005
         (195 letters)



>mm_chr6_74659962_74660556
          Length = 595

 Score =  344 bits (178), Expect = 2e-99
 Identities = 187/191 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccgtgtatactgtatcttttttatgatgtatgagaacacagacaaagttatcaagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taccgtgtatactgtatcttttttatgatgtatgagaacacagacaaagttatcaagcta 332

                                                                       
Query: 61  aagcatttcctactatacaaaaatctttaatgccagcaaagattgcaacagttttaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagcatttcctactatacaaaaatctttaatgccagcaaagattgcaacagttttaacaa 272

                                                                       
Query: 121 aggcaactgtggttgatgacttanaagttggtctctattttananatcattttattgttg 180
           ||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||
Sbjct: 271 aggcaactgtggttgatgacttagaagttggtctctattttagagataattttattgttg 212

                      
Query: 181 aataatgtgaa 191
           |||||||||||
Sbjct: 211 aataatgtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)