TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNGACTCCGCGG
AATTCTATGTCCTCTCTCCCTCCTGTCCCCTCTGCCCTCTGCTAGGCAGT
TTACTGGGGCCACAGAGGAACTGTTCTATGAAAATCTTCTATAGAATAGT
GATCAGTGAATTACTATTTTTAGAAAGAACCATATTGTAAATATTTTGGA
CTTTATGATCTGTGTGATCTCCATAGCCGCTACAATAGCGTGAAGACAGC
CATAGATAGCACACAACTAATAATTCTAGCTGTTTCCAAAAAGCTGTGTC
TGTAGTGATGGATGTAATGTGGGCTTTGATCTGAAAGCCACAATTTGCCA
ACTCCTGTTATGGAAACGAAAAAAAAAAAAAAAAGAGCATAAGCTGTATC
TTCATAGATTTTTATAGTTTTTCCCCCTTTGCTACAGTCAACAGAGCATG
GTGCAGGAGCATCATGGTGAGATCCACTCCACCTTAGCTCTCAGGACATT
CAAGTTCCTACTCTGTCTTTTGGAACACCCAGTCTTGAACCCCTGAAGTG
CCATGAGAAAAGTCTGAAGACCCTGGAGAGATTAAGGAGAAAGTCTCTGA
GAGCATGTGGAGAGGAGAGAGGCATAGTGGGGCCACTACCACCAGGGACT
AGGCACGGGAATGACATACTCATTGTTCCTCTGAGGAGGAGCAGCTACCC
ACTGAACTCAACCGATGTCCCTCAGAGAAAGCCCGATGAGCAGAATTACC
CAGCTCAGGCCTG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTAA
TGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATA
TTGGATATTAGTACCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGTCTTATTGACGGGGTCTTTTGCCTTACAGA
AGCTTTGTAATTTTATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCA
CAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTC
GAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGGGTCACTGGTTTTA
TGTGGAGTTCCTTAATCCACTCACATTTGACCTTAGTACAAGGAGATAGG
AATGGATCAATTTGCATTCTTCTTCATGATAACCACCAGTTGTGCCAGCA
CCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTTGCTCCCT
TGTCAAAGATCGAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGGCTTC
AATTCTATTCCATTGGTCTACTTGACTGTCGCTATATCAGAACCATGCAG
TTTTTATCACATTTGCTCTGTATTACAGCTTTTAGTTCGGTCTTGCTGAT
TCCCCCATGAGATTTTTTTTATCCCTTGAGAAGAGTTTTTTGCTATCCTA
AGTN

Query= MSMg01no333_a04.b1 MSMg01no333_a04.b1 CHROMAT_FILE:
MSMg01no333_a04.b1 PHD_FILE: MSMg01no333_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:05 2005
         (646 letters)



>mm_chr6_49916984_49918029
          Length = 1046

 Score = 1036 bits (536), Expect = 0.0
 Identities = 624/674 (92%), Gaps = 38/674 (5%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattctatgtcc----t---ct-ctc-cctcctgtcccctctgccctctgctaggcagt 52
           |||||||||||||    |   || ||| ||||||||||||||||||||||||| ||||||
Sbjct: 182 gaattctatgtccatggtgccctcctctcctcctgtcccctctgccctctgctgggcagt 241

                                                                       
Query: 53  ttactggggccacagaggaactgttctatgaaaatcttctatagaatagtgatcagtgaa 112
           |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 242 ttactggggccacaaaggaactgttctacgaaaatattctatagaatagtgatcagtgaa 301

                                                                       
Query: 113 ttactatttttagaaagaaccatattgtaaatattttggactttatgatctgtgtgatct 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttactatttttagaaagaaccatattgtaaatattttggactttatgatctgtgtgatct 361

                                                                       
Query: 173 ccatagccgctacaatagcgtgaagacagccatagatagcacacaactaataattctagc 232
           |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 362 ccatagccactacaatagcatgaagacagccatagataacacacaactaataattctagc 421

                                                                       
Query: 233 tgtttccaaaaagctgtgtctgtagtgatggatgtaatgtgggctttgatctgaaagcca 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 422 tgtttccaaaaagctgtgtctgtagtgatggatgtaatgtgggctttgatctgaaagtaa 481

                                                                       
Query: 293 caatttgccaactcctgttatggaaacgaaaaaaaaaaaaaaaagagcataagctgtatc 352
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 482 caatttgccaactcctgttatggaaacgaaaaaaaaaaaa----gagcataagctgtatc 537

                                                                       
Query: 353 ttcatagatttttatagtttttcccccttt--------------------gctacagtca 392
           |||||||||||| |||||||||     |||                    ||||||||||
Sbjct: 538 ttcatagattttaatagttttt-----ttttttgttttgttttgttttttgctacagtca 592

                                                                       
Query: 393 acagagcatggtgcaggagcatcatggtgagatccactccaccttagctctcaggacatt 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acagagcatggtgcaggagcatcatggtgagatccactccaccttagctctcaggacatt 652

                                                                       
Query: 453 caagttcctactctgtcttttggaacacccagtcttgaacccctgaagtgccatgagaaa 512
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 caggttcctactctgtcttttggaacacccagtcttgaacccctgaagtgccatgagaaa 712

                                                                       
Query: 513 agtctgaagaccctggagagattaaggagaaagtctctgagagcatgtggagaggagaga 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agtctgaagaccctggagagattaaggagaaagtctctgagagcatgtggagaggagaga 772

                                                                       
Query: 573 ggcatagtggggccactaccaccagggactaggcacgggaatgacatactcattgttcct 632
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 773 ggcatagtggggccactaccaccagggactaggcatgggaatgacatactcattgttcct 832

                         
Query: 633 ctgaggaggagcag 646
           ||||||||||||||
Sbjct: 833 ctgaggaggagcag 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)