BAC Information

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BAC

Clone NameMSMg01-334D07
Chromosome6 (Build37)
Map Location 87,887,639 - 87,887,874
singlet/doubletsinglet
Overlap genenone
Upstream geneAak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik
Downstream geneLOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334D07.T7 (MSMg01no334_d07.b1)MSMg01-334D07.TJ (MSMg01no334_d07.g1)
ACCAG449761AG449762
length736722
length of high quality
(start - end)
590 (48 - 637)244 (62 - 305)
definitionCHROMAT_FILE: MSMg01no334_d07.b1 PHD_FILE: MSMg01no334_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:33 2005CHROMAT_FILE: MSMg01no334_d07.g1 PHD_FILE: MSMg01no334_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATACCGCG
GAATTCTGCTGTTCTTTCTACAAAGCCTGCATTATCCTGATACCACAACC
CAATGACTATTTAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAGGGCTGGTGAGATGGCTCAACAGATAAGAG
CACCCGACTGTTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACAT
GGTGGCTCACAACCATCCCTAACAAGATCTGGCGCCCTCTTCTGGAGTGT
CTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAA
AAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAAGAAATACTATAGCACCATATCCCTAAAAAACAAAAA
TGCAAAATTTCTCCATAAAACATACATGAAAGAATTAGACAGCCTGCTAT
GGTATCACATATACACCTGTAATCTCAGTAGTAGGTGGAATGAAGAGTTT
GAGGCTAGCCTCGGTTCTATAATAAGACACTATCCAAAAAAAAAAAAAAA
AAAAAAGATACACGGATACACAAACCAGAGATGCAAGGATGGATTGCGCA
TACAAATTACAAATCATGACTCACCTCAACATAATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGC
CCAAAACAAAAAAAACCAAAACCTCATTGAAACGAGATTATTCCCTAAAC
CAGAGGCCATAGCAGAAGCACAGGGTGTCAGGACCCTGGCTAGTAGGGTC
AACCCACTAGCTCTGAGCTGGCTCCAGTGAAAAGCCCTAGAGGGAAGACA
GCCTGGGACGGACAGGGTGGTGGGCCTGCAGGCACCTGGCTCTGTCTCCA
AGGATCCGCCCGCACTGGGTGGACGCTTTGGCTTTGGCGCACTCACATAA
CATTTGTTTTTTGTAGGATTGGTGGAAACCCGACCCCTAATTTGCATAAG
CCGGAGGCCGGCGCGCATCCCAGGATCCCTCCCACTCAGCTGCAGCTGCC
TCTGCAGGAGCAGACCATGCCCTGGTTTCTATGTCCCAATCTACACATGA
GCGGTTCTTGGGAGCCGTGGCCTCCAGCTGCCCTCTCTCTGCACTAAGGT
GTTGTCCAGAGGCCTGGCAGAGATCACAGCCCTTTTGGCAGAGACAGCCC
TCGGGAGCGCCTGTACTTCGTACTTACATGGTGTGCTGGAGTGTAGGCAC
ACCTGACCTGCTCGCTACATTGGCCCTGGCTCTCGCTTACTCTGTTTTTG
ATACTCAAAATTGGGACTATCATTGGATTAAACCCGGCTGTCACCTTGGG
TCACCTAACTCTTGAACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_d07.g1 MSMg01no334_d07.g1 CHROMAT_FILE:
MSMg01no334_d07.g1 PHD_FILE: MSMg01no334_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:33 2005
         (244 letters)



>mm_chr6_87887439_87888077
          Length = 639

 Score =  404 bits (209), Expect = e-117
 Identities = 231/241 (95%), Gaps = 5/241 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaccaaaacctcattgaaacgagattattccctaaaccagaggccatagcagaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaaaccaaaacctcattgaaacgagattattccctaaaccagaggccatagcagaagcac 377

                                                                       
Query: 61  agggtgtcaggaccctggctagtagggtcaacccactagctctgagctggctccagtgaa 120
           ||||||||||||||||||||| ||||||     |||||||||||||||||||||| ||||
Sbjct: 376 agggtgtcaggaccctggctactagggt-----cactagctctgagctggctccattgaa 322

                                                                       
Query: 121 aagccctagagggaagacagcctgggacggacagggtggtgggcctgcaggcacctggct 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aagccctagagggaagacagcctgggaaggacagggtggtgggcctgcaggcacctggct 262

                                                                       
Query: 181 ctgtctccaaggatccgcccgcactgggtggacgctttggctttggcgcactcacataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 261 ctgtctccaaggatccgcccgcactgggtggacgctttggctttggcacactcacagaac 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 639
Length adjustment: 9
Effective length of query: 235
Effective length of database: 630
Effective search space:   148050
Effective search space used:   148050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)