BAC Information

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BAC

Clone NameMSMg01-334P19
Chromosome6 (Build37)
Map Location 18,767,285 - 18,767,703
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334P19.T7 (MSMg01no334_p19.b1)MSMg01-334P19.TJ (MSMg01no334_p19.g1)
ACCAG450349AG450350
length723719
length of high quality
(start - end)
97 (73 - 169)420 (73 - 492)
definitionCHROMAT_FILE: MSMg01no334_p19.b1 PHD_FILE: MSMg01no334_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:35 2005CHROMAT_FILE: MSMg01no334_p19.g1 PHD_FILE: MSMg01no334_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAGAGCCGCGNGAT
TCAGATAAAGTTGACTCAAAAATTTTGCCCTTATGAGATGAGGATGAGGT
ATATATATATATATATATATACCCATATATATATATATATATATATATAT
ATATATATATATATATATAGAGATATATATGTACACCCACACACACACAC
TCGCGCGCGCGCGCGCGCGCGCGCGCGCGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGCGGGCGGGCGCGCGCGCGCGCGCGCGGCCGGCCGGGGGGT
GCGTCTGNCCGCCCCCGCGTCTTTTTTCTTGCGCNCCCGCCCCCCGGCGC
GCGGGTGGGGGGGGGGGGGGGCGGCCCCCCCCCCCCGCCGCCGCTCTGGC
CCACCCTCGGAAAGGGGGCGCGGCCCCCCCGGGGGGGGGGGGGGGGGGGG
CGGGGCGCCGGCCCGCGCCCGCCCCGGGGCCGGGCCGGCGCCCGGCGCCG
GCCGCCCGGCGCGGCGGGCCCTGCCGCCGCCGCCCGCCGGGGCCGGCCCG
CCCGCGGGCCCGCCGGGCCGGGCGCGGGCGCCCCGCGCCGCGCGGGCCGG
GGGCCCGCGGGGCGGGCGGGGCGCGGCGCGCCCCCCCGCCGGGGCGGGCG
CCGCGCGCGCCGCCGCGCCCGGCGCGGGCCCGGCGGGCGGCCCGCCGGGG
GCGCGCCCCGGCGCCCCCCCCCN
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCAGCTGTGTGGGTGCAGGACCAGC
AGGGAGTTGGATTTAACTAGGTTGTATCTGACTAATCACAGAAGCAATCT
CTACTCCCCACACCCTATTCACCCACTCATGGAAAAATCAGCTATCTCTT
TCCTAGCATACAGGAAGGTGGAGATGTTGATGAATCTGACTTGGCTTTCC
ATAACTCCTGCAAAAGTTTTGTTGTGTGTTATTCCCTCTTCTCTTGGTTG
TTCATTTTCATCATTATGCTTTTTTATTGTGCCCTGACTGCAATTTTCCA
AGTAAACATAATGACAACCATGGGTAGCGATATAATTAGCATCCTCACAA
TATCTTAACAATGTTAAGTATCATTATTGACACACTTATGTTTGGGACAT
TTAATATATGCTGAATCTTTTCAACAATTTCTCTTTTAAAAGTTTAATTT
TCAAATTTTTCTCTTTCCTATATGTGTGTGCGTGTGTGTAAATGCCATTC
TAATGCAGTGTCCTTTGGGGCCATAGTAAAGATTTGGAATCCCTAGAAGC
TGGAGTAAAAGGAGGGTGAACAGTCCCCCAGAGTTGGGATTCTTGCTCCC
AATTGTGGTGTTCCTTCTTAGGTCGGGGATTTTCACGACTATGGGTATTC
CTCTCTCTGTTAGTCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_p19.g1 MSMg01no334_p19.g1 CHROMAT_FILE:
MSMg01no334_p19.g1 PHD_FILE: MSMg01no334_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:35 2005
         (420 letters)



>mm_chr6_18767084_18767903
          Length = 820

 Score =  714 bits (369), Expect = 0.0
 Identities = 407/425 (95%), Gaps = 11/425 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcagctgtgtgggtgcaggaccagcagggagttggatttaactaggttgtatctgac 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 tcttcagctgtgtgggtgcaggaccagcagggagttg-atttaactaggttgtatctgac 260

                                                                       
Query: 61  taatcacagaagcaatctctactccccacaccctattcacccactcatggaaaaatcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatcacagaagcaatctctactccccacaccctattcacccactcatggaaaaatcagc 320

                                                                       
Query: 121 tatctctttcctagcatacaggaaggtggagatgttgatgaatctgacttggctttccat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctctttcctagtatacaggaaggtggagatgttgatgaatctgacttggctttccat 380

                                                                       
Query: 181 aactcctgcaaaagttttgttgtgtgttattccctcttctcttggttgttcattttcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcctgcaaaagttttgttgtgtgttattccctcttctcttggttgttcattttcatc 440

                                                                       
Query: 241 atta-----tgcttttttattgtgccctgactgcaattttccaagtaaacataatgacaa 295
           ||||     | ||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attacacagtact-----attgtgccctgactgcaattttccaagtaaacataatgacaa 495

                                                                       
Query: 296 ccatgggtagcgatataattagcatcctcacaatatcttaacaatgttaagtatcattat 355
           |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 496 ccatggatagtgatataattagcatcctcacaatatcttaacgatgttaagtatcattat 555

                                                                       
Query: 356 tgacacacttatgtttgggacatttaatatatgctgaatcttttcaacaatttctctttt 415
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 556 tgacacatttatgtttgggacatttaatatatactgaatcttttcaacaatttctctttt 615

                
Query: 416 aaaag 420
           |||||
Sbjct: 616 aaaag 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)