BAC Information

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BAC

Clone NameMSMg01-335A05
Chromosome6 (Build37)
Map Location 130,381,165 - 130,381,704
singlet/doubletsinglet
Overlap genenone
Upstream geneClec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436
Downstream geneEG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335A05.T7 (MSMg01no335_a05.b1)MSMg01-335A05.TJ (MSMg01no335_a05.g1)
ACCAG450369AG450370
length708732
length of high quality
(start - end)
574 (36 - 609)549 (77 - 625)
definitionCHROMAT_FILE: MSMg01no335_a05.b1 PHD_FILE: MSMg01no335_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:38 2005CHROMAT_FILE: MSMg01no335_a05.g1 PHD_FILE: MSMg01no335_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGTC
TAATAGAACTGCAGGGACAAAAATGGAGACTGAATAAAAGGAGGTTCAGT
GACTGCCACTAGTTGGAACCCATCTCAAGAGGAGACTACAATGCCTGACA
CTCCTACTGATACTGTGATGTACTTACAGATAGGAGCCTAGCAGAGCAGC
TCTCTGATAGGCCTATAAGAAGCTGACTGAGACAGAAGCAAATACTTACC
TCTACTGAATGATCTGAATTTGTGGACCCCTGTAACTGAATTAGGGAAAG
CCTGAGAGAAGTTAAGTAGGGGCATAACCCCTTAAGAAAACAAGAAGTTG
CAACACACCTGGACTGCATGAGAACTCATAGACACTCATCCACCAACCAG
TCAGCATACAGTAGTTGATATGAGGCTCCTAACACATATAGAGTAGAGGA
CTGCTTTGTGTGTCCTCAGTAAGGGAAGAGGCACCTACCCTTAAGAGATT
TGAGGCCCCATAGAATCAGGAGGCTTTATGGGGTGTGGGAGTGTGTGGGG
TGTGGTTCTGGGGACAACTTATTGAAAACAGTAGTGGAGGAATGAGATGA
ATACTGTCAGAGAATGTACTTGGAGTGCGTTAACAGTTTGATTGTACTAA
AACCTACCTATATTACACATATATTAATAACATTTAACAAAGATATTATA
GACCCCTC
GGCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAACCTCCCATTTCCTCTTGAAA
AAAATAGGTATAGAAGACCTTTACCTGTGTGCCATGTATTGCATTTTTCT
TTTTCATGTTCTCTTGTTTTTGCAAAGAGTGTCAGAGGAAATCAATTTTA
TTATAAAATTATCTCTTAGAATTATGGGAAATTAAGTTAACCTTTTCATA
AAAAAATAACATTGGAGAATATATGAGGAGTTGAGTTGTGATCAAAGGAA
CATTTTATTTTTTCATTTTTAATTCATTTATTTTTGTCTTATGTACAGGC
ATGTGGATGTGCAGTTCACAGCATGAGTGTAGATAGAGGGAAATTAGGGA
GTAATTTCTCTACTAATTTGTGGGGGTCTGAAGTCTGAACGCAAGTTTTC
AGGTTTGGTGGGCCATGCCACTAGTACAAGAACTTCTTTCCCTAGTTTGG
AGGAAATTAACAGATTTATTGATACACTTATGATTAAGTCCATATTCTGT
ACATTTCTATTTATAAACCTTGTTTTAAAAATCTTGGCCTAAATCAATGT
AAGTTTCAAAATTAAATAACGCACACAAACACACACACACACACATACAC
TTATACATTCCACTTATATATATATATATATATATATATACCCTCACACA
TATATATAAATATATACTTCTCCCACACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_a05.g1 MSMg01no335_a05.g1 CHROMAT_FILE:
MSMg01no335_a05.g1 PHD_FILE: MSMg01no335_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:38 2005
         (549 letters)



>mm_chr6_130380965_130381910
          Length = 946

 Score =  872 bits (451), Expect = 0.0
 Identities = 520/543 (95%), Gaps = 3/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacctcccatttcctcttgaaaaaaataggtatagaagacctttacctgtgtgccatg 60
           |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||
Sbjct: 740 caaacctcccttttcctcttg-aaaaaataggtatagaagaccttttcctgtgtgctatg 682

                                                                       
Query: 61  tattgcatttttctttttcatgttctcttgtttttgcaaagagtgtcagaggaaatcaat 120
           ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||
Sbjct: 681 tattgcatttttctttttcttgttctcttgtttttggaaagagtgtcagaggaaataaat 622

                                                                       
Query: 121 tttattataaaattatctcttagaattatgggaaattaagttaaccttttcataaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 tttattataaaattatctcttagaattatgggaaattaagttaaccttttcgtaaaaaaa 562

                                                                       
Query: 181 taacattggagaatatatgaggagttgagttgtgatcaaaggaacattttattttttcat 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaca-tggagaatatatgaggagttgagttgtgatcaaaggaacattttattttttcat 503

                                                                       
Query: 241 ttttaattcatttatttttgtcttatgtacaggcatgtggatgtgcagttcacagcatga 300
           ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 502 ttttaattcatttatttctgttttatgtataggcatgtggatgtgcagttcacagcatga 443

                                                                       
Query: 301 gtgtagatagagggaaattagggagtaatttctctactaatttgtgggggtctgaagtct 360
           |||||||||||||| ||||||||||| |||||||| ||| ||||| || |||| ||||||
Sbjct: 442 gtgtagatagagggcaattagggagttatttctctcctactttgt-ggtgtctaaagtct 384

                                                                       
Query: 361 gaacgcaagttttcaggtttggtgggccatgccactagtacaagaacttctttccctagt 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 gaactcaagttttcaggtttggtgggccatgccactagtacaagaacttctttcccttgt 324

                                                                       
Query: 421 ttggaggaaattaacagatttattgatacacttatgattaagtccatattctgtacattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttggaggaaattaacagatttattgatacacttatgattaagtccatattctgtacattt 264

                                                                       
Query: 481 ctatttataaaccttgttttaaaaatcttggcctaaatcaatgtaagtttcaaaattaaa 540
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 ctgtttataaaccttgttttaaaaatcttggcataaatcaatgtaagtttcaaaattaaa 204

              
Query: 541 taa 543
           |||
Sbjct: 203 taa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 946
Length adjustment: 10
Effective length of query: 539
Effective length of database: 936
Effective search space:   504504
Effective search space used:   504504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)