BAC Information

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BAC

Clone NameMSMg01-335E03
Chromosome6 (Build37)
Map Location 146,794,453 - 146,836,111
singlet/doubletdoublet
Overlap gene1700023A16Rik
Upstream geneBhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2
Downstream genePpfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335E03.T7 (MSMg01no335_e03.b1)MSMg01-335E03.TJ (MSMg01no335_e03.g1)
ACCAG450555AG450556
length732770
length of high quality
(start - end)		519 (30 - 548)341 (74 - 414)
definitionCHROMAT_FILE: MSMg01no335_e03.b1 PHD_FILE: MSMg01no335_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:57 2005CHROMAT_FILE: MSMg01no335_e03.g1 PHD_FILE: MSMg01no335_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,835,599 - 146,836,111)(146,794,453 - 146,794,793)
sequence
GCCGCTATACGACTCCTATAGGTAGAGGATCCGCGGAATTCTCCCAGTTG
TGAGATAGGGGCTGTGGGCTGAACTCAAGTGTTTCTGCAAAAAGAGCAGA
AGAGGTTAACTGTTTGGCCATCTCTTCAGGCCCTATGCTGAACTTTTTAA
GTCCCATAAGGCTTCTGTTTTGATGCACAACTGAAAAGGGAGAACCCTCA
CAACTGAGTTCAAACCACATGATAATAATTACTGTTGAACCAATTGCAGT
GACTGAGCTAACAATTAAGAATTAACTACTATTTACCCTCTGGTGGATAT
CAGCTGTGTAATCCTCTTGGCTGCAAAGTCAGGGAGATTCTCAGGAGCCC
TTCTTTCAGTTTCCCCTGTCAGACCCAGAACTGAACTGAATAATGAAAAG
CAGCTTTATGGATACAGAATATGATTAGTTTCTGTTAGCTTTTTGTTGGC
TATGAGCCTCCCCAGCCCCCACCGCCGCCGCTGCCACCACCCTGGGGAAC
GGAAGGTGGTGTGTTTGTGTATGTGTTGACTGGGGGGTTTGATTTTAGTT
TTCTTGACACAGATTCTTATAGTACCTGAACCTATCCTTGAACTCACTAT
TGTCAACATATGCCAGTCCTTGAACTCTCCAACCTTCCTTCCACTATATC
CCACATGTCTGCTAATTAACGCGCGCTGACCCGGTGACTTTCTTCTTTTG
CCCTTTAATGTGTTGTCTTTTTCGATCCCTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTGAGACGTTGCTCTAGCTGAAGGG
GTTCTTGATTTTTAGTAGAGTCCAAATAGTCAAACCAGCCCTTAGTCAGA
GGCACAAACACATCTGCCTTTCGGTTTATTACTGTGCTGAACGGATTCTT
TGCCACTTCGGGTCATCCTTCAGACACCCAGATTGTAGGCAGTTCTCACA
TCTATTCTTTCCACCCCCGTGACAGTACATGAGCTAAGGCTGAGTGAATG
CTGGTCCCCAGGGATCTGCAGGGTCAGGGCCCCCAGGGATCTGCAGAGTC
AGGGCCCTGTGAGCCTCTGCTCACACTGACATCTACCAACCAATCTGTGA
ACTTGGTTTATATGCATTCCTGTTTAAAGACATATTTATTGTATATGTAT
CCAGGGTTGGCCTTGAACTCATTTTGTATCCCAGAATGACCTTGGATTTG
ATCCCCTTGTTTCTGCTTCCCCCATGCTGGTATCACATTGCCTGTTAAAC
CCACCCCTCCGCTCAATCCCTTTTATATCCTGGTTTTTTATCCGGCTGTA
TATTACCCCTTGTTATTTTATCTTCCCGCGTTTTTCTTCCTTTTTTTGGC
TGCCCTTCGTGATTTCCCCTTATTATTTGTCGCTTCCCACCATTTCTCAT
TTGCTCTGTTTTTCGTCCTCTTACCCCCCACTCTCTACCCCTTCTCTTTC
TTTTTTCCACACCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_e03.b1 MSMg01no335_e03.b1 CHROMAT_FILE:
MSMg01no335_e03.b1 PHD_FILE: MSMg01no335_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:57 2005
         (519 letters)



>mm_chr6_146835295_146836213
          Length = 919

 Score =  992 bits (513), Expect = 0.0
 Identities = 513/513 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctcccagttgtgagataggggctgtgggctgaactcaagtgtttctgcaaaaaga 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattctcccagttgtgagataggggctgtgggctgaactcaagtgtttctgcaaaaaga 758

                                                                       
Query: 67  gcagaagaggttaactgtttggccatctcttcaggccctatgctgaactttttaagtccc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gcagaagaggttaactgtttggccatctcttcaggccctatgctgaactttttaagtccc 698

                                                                       
Query: 127 ataaggcttctgttttgatgcacaactgaaaagggagaaccctcacaactgagttcaaac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ataaggcttctgttttgatgcacaactgaaaagggagaaccctcacaactgagttcaaac 638

                                                                       
Query: 187 cacatgataataattactgttgaaccaattgcagtgactgagctaacaattaagaattaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cacatgataataattactgttgaaccaattgcagtgactgagctaacaattaagaattaa 578

                                                                       
Query: 247 ctactatttaccctctggtggatatcagctgtgtaatcctcttggctgcaaagtcaggga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctactatttaccctctggtggatatcagctgtgtaatcctcttggctgcaaagtcaggga 518

                                                                       
Query: 307 gattctcaggagcccttctttcagtttcccctgtcagacccagaactgaactgaataatg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gattctcaggagcccttctttcagtttcccctgtcagacccagaactgaactgaataatg 458

                                                                       
Query: 367 aaaagcagctttatggatacagaatatgattagtttctgttagctttttgttggctatga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaaagcagctttatggatacagaatatgattagtttctgttagctttttgttggctatga 398

                                                                       
Query: 427 gcctccccagcccccaccgccgccgctgccaccaccctggggaacggaaggtggtgtgtt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcctccccagcccccaccgccgccgctgccaccaccctggggaacggaaggtggtgtgtt 338

                                            
Query: 487 tgtgtatgtgttgactggggggtttgattttag 519
           |||||||||||||||||||||||||||||||||
Sbjct: 337 tgtgtatgtgttgactggggggtttgattttag 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no335_e03.g1 MSMg01no335_e03.g1 CHROMAT_FILE:
MSMg01no335_e03.g1 PHD_FILE: MSMg01no335_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:57 2005
         (341 letters)



>mm_chr6_146794253_146794993
          Length = 741

 Score =  659 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgagacgttgctctagctgaaggggttcttgatttttagtagagtccaaatagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgagacgttgctctagctgaaggggttcttgatttttagtagagtccaaatagtcaa 260

                                                                       
Query: 61  accagcccttagtcagaggcacaaacacatctgcctttcggtttattactgtgctgaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagcccttagtcagaggcacaaacacatctgcctttcggtttattactgtgctgaacg 320

                                                                       
Query: 121 gattctttgccacttcgggtcatccttcagacacccagattgtaggcagttctcacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattctttgccacttcgggtcatccttcagacacccagattgtaggcagttctcacatct 380

                                                                       
Query: 181 attctttccacccccgtgacagtacatgagctaaggctgagtgaatgctggtccccaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctttccacccccgtgacagtacatgagctaaggctgagtgaatgctggtccccaggg 440

                                                                       
Query: 241 atctgcagggtcagggcccccagggatctgcagagtcagggccctgtgagcctctgctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgcagggtcagggcccccagggatctgcagagtcagggccctgtgagcctctgctca 500

                                                    
Query: 301 cactgacatctaccaaccaatctgtgaacttggtttatatg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgacatctaccaaccaatctgtgaacttggtttatatg 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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