Query= MSMg01no336_d10.b1 MSMg01no336_d10.b1 CHROMAT_FILE:
MSMg01no336_d10.b1 PHD_FILE: MSMg01no336_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(591 letters)
>mm_chr6_97419684_97420674
Length = 991
Score = 1050 bits (543), Expect = 0.0
Identities = 570/587 (97%), Gaps = 15/587 (2%)
Strand = Plus / Minus
Query: 5 gaattccaggcc--ttcctacccataatggcatacgacttcaaacagaacacgggttgga 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gaattccaggccagt--gtacccataatggcatacgacttcaaacagaacacgggttgga 913
Query: 63 tgtgtctcaatgttacagttactcatctagcacacacaagcccctgggtttgacccccag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 tgtgtctcaatgttacagttactcatctagcacacacaagcccctgggtttgacccccag 853
Query: 123 catacacagacaaacgttgttgaatttaaatgggaggagacaaatgactacttagagtga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 catacacagacaaacgttgttgaatttaaatgggaggagacaaatgactacttagagtga 793
Query: 183 tgtcctaacgtgaacccaaagttctaccttacaaaataaacaaaatagagcaggaaaagc 242
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tgt-----------cccaaagttctaccttacaaaataaacaaaatagagcaggaaaagc 744
Query: 243 attctggaaatgagagtctctcttctctcatgtaggtgaaattacctaagatggcaacta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attctggaaatgagagtctctcttctctcatgtaggtgaaattacctaagatggcaacta 684
Query: 303 atggagatatttctgagaagaaaaaatatatacttagttcgataaattcttactatcttt 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 683 atggagatatttctgagaagaaaaaatatatacttagtttgataaattcttactatcttt 624
Query: 363 ttgtaggaccatttacttgtatgcaaccaaaatgtaaggtatatcgctcttgaccagata 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgtaggaccatttacttgtatgcaaccaaaatgtaaggtatatcgctcttgaccagata 564
Query: 423 tttatttgggtgcaggttgttattgtcccattattagcaaaccagtaagttaagtgacag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttatttgggtgcaggttgttattgtcccattattagcaaaccagtaagttaagtgacag 504
Query: 483 tcctcttgtatgatggttagcttgacacaatgtagaatcgtttgtgtcaataagggattg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcctcttgtatgatggttagcttgacacaatgtagaatcgtttgtgtcaataagggattg 444
Query: 543 tctagatcagtttggtaaatggacatgcctatggatgggattatctt 589
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctagatcagtttggtaaatggacatgcctatggatgggattatctt 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_d10.g1 MSMg01no336_d10.g1 CHROMAT_FILE:
MSMg01no336_d10.g1 PHD_FILE: MSMg01no336_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(523 letters)
>mm_chr6_97230596_97231518
Length = 923
Score = 936 bits (484), Expect = 0.0
Identities = 514/526 (97%), Gaps = 6/526 (1%)
Strand = Plus / Plus
Query: 1 ttaacagttactgtgtggtcatgggaccaaaggtttggcaacctttctgagccattcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacagttactgtgtggtcatgggaccaaaggtttggcaacctttctgagccattcttc 260
Query: 61 atggccttgtcagggcatacaactttccgatagagtcacaggagagggctaagtgaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggccttgtcagggcatacaactttccgatagagtcacaggagagggctaagtgaattg 320
Query: 121 acacacaggacagtttgagtgccgttgtgagggctttcttttctgttgctcagacttctt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacaggacagtttgaatgccgttgtgagggctttcttttctgttgctcagacttctt 380
Query: 181 taatactagcctcagtatttggggaatgaccccatcaagcatcaactcctcaaagggacc 240
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 381 taatactagcctcagtatttggggaatgacctcatccagcatcaactcctcaaagggacc 440
Query: 241 tgggatgtcccaccaatctcaggtaggattcgtgcctttattctctctcatcacccttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggatgtcccaccaatctcaggtaggattcgtgcctttattctctctcatcacccttgg 500
Query: 301 tcttttttttgcgggaaatattttaaaaaa---ttaaaataaaaggacctgtagacctgc 357
||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 501 tcttttttt-gcgggaaatatt--aaaaaaaaattaaaataaaaggacctgtagacctgc 557
Query: 358 gctactgctggcaactggtgggccacatggctccagctgagtgatctcaacttggtggtc 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 gctactgctggcaactggtgggccacatggctccagctgggtgatctcaacttggtggtc 617
Query: 418 tctctggaaggggctggagctcctgcgttccctctctaccactccagccccacgcaacga 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtctggaaggggctggagctcctgcgttccctctctaccactccagccccacgcaacga 677
Query: 478 ctgtccaactctcggtcagccaccacaccactcatcaacccggtaa 523
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 678 ctgtccaactctcggtcagccgccacaccactcatcaacccggtaa 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
