BAC Information

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BAC

Clone NameMSMg01-336G19
Chromosome6 (Build37)
Map Location 96,256,631 - 96,443,544
singlet/doubletdoublet
Overlap geneC630007B19Rik
Upstream geneSuclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336G19.T7 (MSMg01no336_g19.b1)MSMg01-336G19.TJ (MSMg01no336_g19.g1)
ACCAG451447AG451448
length739734
length of high quality
(start - end)		520 (44 - 563)454 (71 - 524)
definitionCHROMAT_FILE: MSMg01no336_g19.b1 PHD_FILE: MSMg01no336_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:29 2005CHROMAT_FILE: MSMg01no336_g19.g1 PHD_FILE: MSMg01no336_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,256,631 - 96,257,147)(96,443,091 - 96,443,544)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGGTATTCAAAATGTGCACTTAATCAGTACCACTTACAACTCTAAA
AATGCTGTCTCTTCCTAATCTTAACTGCATCCAACATGCATGGTATTTTG
GAACACACTGTGATCTCAGAAGATAGGCCTAGGCTCACTGAGGTTTTAGG
GAAAATGGCGCTTCTGCAAAGATATCAATGGAAAGTCAGTCAAAACTCAG
GGATCTGAGCCTGCTTCCTTCTACCTGTGAATAAGTAGCTTTCACAGAGT
TGTCGATATGACTCCATCCACATAACTTATAACTTTGCAGGCCTTAAAAT
GATAAGTATATTTTCATAACAATGTGGACCTTGTGTTTATATATTTCTTG
TTCCATGTGCCTTTCATCCTGGAAGTGTTCACTCATTGTCTCAGCTTCTG
GAATCTCTCTGCGTCTCAAAGGTATTCTGTATGCTGCAGTTGAGCTCTGG
ACACATTGTAGAACAATGACTCCTTGGTATGCATGTCTTTCCTTCTATCC
ATTGGACTCCCCCAGAGACTGTGCCTCTTTTCACTCAGNCCCTGCCACGC
GTGGTGGGTGCTAANTGCATGTGAATGAATAAGGGAACCTGGGAGTCAAT
CCATCACCTAATCACTTAACCTGCTTGGAAACTTATGTGGGAACAAAAAT
TGGTCTGAATTTCCCGTCCCCCCCGGGGGTTTAAAATCC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTCTTCTGGTGTCTCTTGAGTAAGGACTA
AAGCTGCAGGAGTGGACGGCTATTTTGACATGAGGGCTGAGGTATAGGAA
CGGGATTGACATCTCTCACGCAGAGTCTCCAGTTTTAGGGGATACTGTAT
TTTCTTATAATAAATTTCATCCTTACATTTTTATTCTTGCTCAAGTGGGT
CTCCACTTCTGCCAAATAAGAGCCTGAACTAATACAGAAATGGGATTGAG
CTATTTGCAGAATCTATCCACTTTTACTCCTGAACAAGGGTCCTAACAAA
ATGAATGTTTGCTAGGCAGAATGACCCAAGTATTCGGTTTGAATACTGAT
AAGCATTTTCCACACATTGCAGCTTGATATAAAAAATCTGGTCTTAAATT
AAGATTGGCGTATCTGGGCTTCCAGATGGTGACTTACATCTTGAAGTAAA
ATGAAATGACTTCTGTCTCTTATGGCAGNTCTGACATCACCATTTATTAN
CAAGCCAGAGTGCACTGTTAGCCGCTGCATAAAACTGTCTCCAAAGGACT
CTTGTCAAGAGTTTTATAAGGTTAGGGGGACAAACCCACTTAGGGATGGG
GATTATTAAAGGGGAGGATGGAAGCCAAGAATTGGGGAAACCCCTCCGGG
TTCTTTAAAAATGGGGCCCCGGGGGGATTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_g19.b1 MSMg01no336_g19.b1 CHROMAT_FILE:
MSMg01no336_g19.b1 PHD_FILE: MSMg01no336_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:29 2005
         (520 letters)



>mm_chr6_96256428_96257347
          Length = 920

 Score =  922 bits (477), Expect = 0.0
 Identities = 507/517 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatggtattcaaaatgtgcacttaatcagtaccacttacaactctaaaaatgct 63
           ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattcatggtaataaaaatgtgcacttaatcagtacaacttacaactctaaaaatgct 263

                                                                       
Query: 64  gtctcttcctaatcttaactgcatccaacatgcatggtattttggaacacactgtgatct 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtctcttcctaatctcaactgcatccaacatgcatggtattttggaacacactgtgatct 323

                                                                       
Query: 124 cagaagataggcctaggctcactgaggttttagggaaaatggcgcttctgcaaagatatc 183
           ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 cagaagataggccgaggctcactgaggttttaggggaaatggcgcttctgcaaagatatc 383

                                                                       
Query: 184 aatggaaagtcagtcaaaactcagggatctgagcctgcttccttctacctgtgaataagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatggaaagtcagtcaaaactcagggatctgagcctgcttccttctacctgtgaataagt 443

                                                                       
Query: 244 agctttcacagagttgtcgatatgactccatccacataacttataactttgcaggcctta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 agctttcacagagttgtcgatatgactccatccacataacttataactttgcaggcctca 503

                                                                       
Query: 304 aaatgataagtatattttcataacaatgtggaccttgtgtttatatatttcttgttccat 363
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 aaatgataagtgtattttcataacaatgtggaccttgtgtttatgtatttcttgttccat 563

                                                                       
Query: 364 gtgcctttcatcctggaagtgttcactcattgtctcagcttctggaatctctctgcgtct 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 gtgcctttcatcctggaagtgttcactcattgtctcagcttctggaacctctctgcgtct 623

                                                                       
Query: 424 caaaggtattctgtatgctgcagttgagctctggacacattgtagaacaatgactccttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaaggtattctgtatgctgcagttgagctctggacacattgtagaacaatgactccttg 683

                                                
Query: 484 gtatgcatgtctttccttctatccattggactccccc 520
           |||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtatgcatgtctttccttctatccattggactccccc 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_g19.g1 MSMg01no336_g19.g1 CHROMAT_FILE:
MSMg01no336_g19.g1 PHD_FILE: MSMg01no336_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:29 2005
         (454 letters)



>mm_chr6_96442891_96443744
          Length = 854

 Score =  855 bits (442), Expect = 0.0
 Identities = 451/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcttctggtgtctcttgagtaaggactaaagctgcaggagtggacggctattttgaca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 654 cctcttctggtgtctcttgagtaaggactaaagctgcaggagtagacggctattttgaca 595

                                                                       
Query: 61  tgagggctgaggtataggaacgggattgacatctctcacgcagagtctccagttttaggg 120
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 594 tgagggctgaggtataggaatgggattgacatctctcatgcagagtctccagttttaggg 535

                                                                       
Query: 121 gatactgtattttcttataataaatttcatccttacatttttattcttgctcaagtgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gatactgtattttcttataataaatttcatccttacatttttattcttgctcaagtgggt 475

                                                                       
Query: 181 ctccacttctgccaaataagagcctgaactaatacagaaatgggattgagctatttgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctccacttctgccaaataagagcctgaactaatacagaaatgggattgagctatttgcag 415

                                                                       
Query: 241 aatctatccacttttactcctgaacaagggtcctaacaaaatgaatgtttgctaggcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aatctatccacttttactcctgaacaagggtcctaacaaaatgaatgtttgctaggcaga 355

                                                                       
Query: 301 atgacccaagtattcggtttgaatactgataagcattttccacacattgcagcttgatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atgacccaagtattcggtttgaatactgataagcattttccacacattgcagcttgatat 295

                                                                       
Query: 361 aaaaaatctggtcttaaattaagattggcgtatctgggcttccagatggtgacttacatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaaaaatctggtcttaaattaagattggcgtatctgggcttccagatggtgacttacatc 235

                                             
Query: 421 ttgaagtaaaatgaaatgacttctgtctcttatg 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgaagtaaaatgaaatgacttctgtctcttatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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