Query= MSMg01no337_g02.b1 MSMg01no337_g02.b1 CHROMAT_FILE:
MSMg01no337_g02.b1 PHD_FILE: MSMg01no337_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:44 2005
(548 letters)
>mm_chr6_14241259_14242200
Length = 942
Score = 1009 bits (522), Expect = 0.0
Identities = 536/544 (98%), Gaps = 6/544 (1%)
Strand = Plus / Minus
Query: 5 gaattcattttcttcctttaagttaagtaaataacttaccatttagattgttatgtattt 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattcatcttcttcctttaagttaagtaaataacttaccatttagattgttatgtattt 683
Query: 65 tgctattaatagctttctatcataacatatataacacagaattacaaactagcagagtac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgctattaatagctttctatcataacatatataacacagaattacaaactagcagagtac 623
Query: 125 ccaagggagcaaaataatctgaccctttaagtgcatttgtcaatatttgctatgatcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccaagggagcaaaataatctgaccctttaagtgcatttgtcaatatttgctatgatcaat 563
Query: 185 cccattttaagcaattgacagagaacatcctgtgcatttactcattgtttattttttcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccattttaagcaattgacagagaacatcctgtgcatttactcattgtttattttttcct 503
Query: 245 tatacttctccactggtgttaaaaaaaaaattttaagaatctacaagaagtctgtctaga 304
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 502 tatacttctccactggtgttaaaaaaaa------aagaatctacaagaagtctgtctaga 449
Query: 305 tccctggtgggcataccttttattgtatagagtgcattgacctaatactggaagaagaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccctggtgggcataccttttattgtatagagtgcattgacctaatactggaagaagaaa 389
Query: 365 aaaatcagtaggagggaggaatggaaggaaacaagatggagacacttgtgctaaaatgaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaatcagtaggagggaggaatggaaggaaacaagatggagacacttgtgctaaaatgaa 329
Query: 425 agtcctgctgcgcttattccccagggctggaaacaataccaccgctgttcttttcatcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtcctgctgcgcttattccccagggctggaaacaataccaccgctgttcttttcatcat 269
Query: 485 ttttttcctacagagcagtatttttcctcttctacagaactgaacatttcatttctaact 544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttttttccaacagagcagtatttttcctcttctacagaactgaacatttcatttctaact 209
Query: 545 tttg 548
||||
Sbjct: 208 tttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 942
Length adjustment: 10
Effective length of query: 538
Effective length of database: 932
Effective search space: 501416
Effective search space used: 501416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_g02.g1 MSMg01no337_g02.g1 CHROMAT_FILE:
MSMg01no337_g02.g1 PHD_FILE: MSMg01no337_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:44 2005
(374 letters)
>mm_chr6_14053135_14053908
Length = 774
Score = 646 bits (334), Expect = 0.0
Identities = 362/376 (96%), Gaps = 9/376 (2%)
Strand = Plus / Plus
Query: 1 acttccttggcatataaaatggcattgaatattttagttttcaccttagacttaaaagtg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttccttggcatataaaatggcgttgaatattttagttttcaccttagacttaaaagtg 260
Query: 61 gtgaatctaaagaggctaatgaattgaattcttggtttgtccttgatgtttttgtgtagt 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 261 gtgaatctaaagaggctaatgaattgaactcttggtttgtccttgatgttttcctgtagt 320
Query: 121 aaaggaaaaattcatttgggcataacaagcaaataaacaaacaaacagcacataacttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggaaaaattcatttgggcataacaagcaaataaacaaacaaacagcacataacttga 380
Query: 181 ctatgaggattaattttgatttcacttgatgttttattggaacttatagaggagaaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgaggattaattttgatttcacttgatgttttattggaacttatagaggagaaagta 440
Query: 241 gggaattttt----ctcgaagatatgggaatagggaaaaaattcctcaatagaatagcaa 296
||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gggaa-----aagcctcgaagatatgggaatagggaaaaaattcctcaatagaacagcaa 495
Query: 297 tggcttgtgctgtaagatcgagaatcgacaaatgggacctcataaagttgcaaagcttct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tggcttgtgctgtaagatcgagaatcgacaaatgggacctcataaagttgcaaagcttct 555
Query: 357 gcaaggcaaaagacac 372
||||||||||||||||
Sbjct: 556 gcaaggcaaaagacac 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
