Query= MSMg01no338_l13.b1 MSMg01no338_l13.b1 CHROMAT_FILE:
MSMg01no338_l13.b1 PHD_FILE: MSMg01no338_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:25 2005
(640 letters)
>mm_chr6_17877527_17878566
Length = 1040
Score = 1185 bits (613), Expect = 0.0
Identities = 628/633 (99%)
Strand = Plus / Plus
Query: 8 ggaattcactctcttgtccctgtgctacagataatctcaatagtgttctgtttgacagga 67
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcactctcaggtccctgtgctacagataatctcaatagtgttctgtttgacagga 267
Query: 68 aaaatatcaaccaagtgtcagctaaatatcaaaacgtgtcttctatccgtctgtgtaacg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaatatcaaccaagtgtcagctaaatatcaaaacgtgtcttctatccgtctgtgtaacg 327
Query: 128 ggagggtgaccgtttgtaattgtctcgtgtctccagcctctatccatctgtggctttgtt 187
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggagggtgactgtttgtaattgtctcgtgtctccagcctctatccatctgtggctttgtt 387
Query: 188 gatactcgctcggatgctgctgagggcttctgacccatatggcactgagcagtgtgttac 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 388 gatactcgctcggatgctgctgagggcttctgacccatatggcactgagcagtgtggtac 447
Query: 248 ctaggaagtgcctttgactagggagagcggatgacggcacatgctgtctaggtagactag 307
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 448 ctaggaagtgcctttgactagggagagcggaagacggcacatgctgtctaggtagactag 507
Query: 308 gttgtacaggatgttttggtgtgctttggaactttagtgacacctctgacgaaaggggca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gttgtacaggatgttttggtgtgctttggaactttagtgacacctctgacgaaaggggca 567
Query: 368 agcagcatcaagatgaagagcgtgccccatgaagaaagaagtagaaatgccgcttgtgta 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agcagcatcaagatgaagagcgtgccccatgaagaaagaagtagaaatgccgcttgtgta 627
Query: 428 ccatttttttaaagtagcctaggtttactgctttgttttgaaccacatatctgtacaatt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccatttttttaaagtagcctaggtttactgctttgttttgaaccacatatctgtacaatt 687
Query: 488 ttaatttatctaaaatatgtttctaaaagacttttaggaattacatagtcatttgaaaat 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttaatttatctaaaatatgtttctaaaagacttttaggaattacatagtcatttgaaaat 747
Query: 548 agtatcttcaaatagtctatttctattcatatttgaaccactcaataagtgtcttcttag 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 agtatcttcaaatagtctatttctattcatatttgaaccactcaataagtgtcttcttag 807
Query: 608 gatttacactgacaaaatctctggacatttggt 640
|||||||||||||||||||||||||||||||||
Sbjct: 808 gatttacactgacaaaatctctggacatttggt 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_l13.g1 MSMg01no338_l13.g1 CHROMAT_FILE:
MSMg01no338_l13.g1 PHD_FILE: MSMg01no338_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:25 2005
(568 letters)
>mm_chr6_18074793_18075760
Length = 968
Score = 843 bits (436), Expect = 0.0
Identities = 469/482 (97%), Gaps = 8/482 (1%)
Strand = Plus / Minus
Query: 90 atatatg--tatatatacatgtatatgtatatatatgtaaatgaaagctatacttatact 147
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 atatatgcatatatatacatgtatatgtatatatatgtaaatgaaagctatacttatact 908
Query: 148 atcataagtatatttgacattgtagtgaaaatataaagtatattataagtgtacaatata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 atcataagtatatttgacattgtagtgaaaatataaagtatattataagtgtacaatata 848
Query: 208 taatactatataagtaatatatataatatagt-atataatatagtaatataatatatata 266
|||||||||||||||| |||||||||||||| |||||||||| | ||||| |||||||
Sbjct: 847 taatactatataagta--atatataatatagtaatataatataat-atata--atatata 793
Query: 267 atattatataagtaatatagtatacaatttatgctacagtgtcaaaatagctctcatttt 326
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 792 atattatataagtaatatagtatacaatttatactacagtgtcaaaatagctatcatttt 733
Query: 327 aaagtctgtgtatatagagagaagtataatagtatatttgacattataggataaatacag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aaagtctgtgtatatagagagaagtataatagtatatttgacattataggataaatacag 673
Query: 387 gagatatctactaaaggaatgattatttcaaaattatttctaaaaagcatcacagagttc 446
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 672 gagatatctactaaaggaatgattatttcaatattatttctaaaaagcatcacagagttc 613
Query: 447 ttagttcctttaaacagtaccaatgaagtgtgtggtttatatcatgcatagaatttacaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttagttcctttaaacagtaccaatgaagtgtgtggtttatatcatgcatagaatttacaa 553
Query: 507 ttaattcctttataaaacagacctataaaaccagggagcttcaatttataatccttttct 566
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 552 ttaattcctttataaaacagacctataaaaccagggagcctcaatttataatccttttct 493
Query: 567 tc 568
||
Sbjct: 492 tc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
