Query= MSMg01no338_l22.b1 MSMg01no338_l22.b1 CHROMAT_FILE:
MSMg01no338_l22.b1 PHD_FILE: MSMg01no338_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:27 2005
(562 letters)
>mm_chr6_138282356_138283317
Length = 962
Score = 1071 bits (554), Expect = 0.0
Identities = 557/558 (99%)
Strand = Plus / Plus
Query: 5 gaattcctttagtttttcgagactcaaatgtccattgtgaccttatagtcagggagctag 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttagttttttgagactcaaatgtccattgtgaccttatagtcagggagctag 264
Query: 65 gttggtagaacgcgcagaagccaaatgtgagctggaagcatgccagtacaaatgcacaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttggtagaacgcgcagaagccaaatgtgagctggaagcatgccagtacaaatgcacaga 324
Query: 125 ggcgctactcagagaagcattgtttctgtgagtaaatgccaaggctggccctgggctaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcgctactcagagaagcattgtttctgtgagtaaatgccaaggctggccctgggctaat 384
Query: 185 ttgaaatgagcagctgcatgggtcacacaagtataagaagtgagcattagcaggtgcaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgaaatgagcagctgcatgggtcacacaagtataagaagtgagcattagcaggtgcaaa 444
Query: 245 gggccacaggctctccttttgtcaatagcgaagtaaacaggtgaagcccttcgcttatcg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggccacaggctctccttttgtcaatagcgaagtaaacaggtgaagcccttcgcttatcg 504
Query: 305 tccaaaaatataaaacttcagactccaattgaaatcagcccatggcatttccggcttcta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccaaaaatataaaacttcagactccaattgaaatcagcccatggcatttccggcttcta 564
Query: 365 tcaatgagtgtggggtgcctgaagcttccccaattcaaatccaggcagtgactcaagacg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaatgagtgtggggtgcctgaagcttccccaattcaaatccaggcagtgactcaagacg 624
Query: 425 agaagaaaataggcattgaggtttttgtggctcttctgctggacagaaatgatgggagct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaagaaaataggcattgaggtttttgtggctcttctgctggacagaaatgatgggagct 684
Query: 485 ctgggcgggggagggggtgagagataaagaaagagagagagggagagagagcaagagaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgggcgggggagggggtgagagataaagaaagagagagagggagagagagcaagagaga 744
Query: 545 gagggtgagagggagaga 562
||||||||||||||||||
Sbjct: 745 gagggtgagagggagaga 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_l22.g1 MSMg01no338_l22.g1 CHROMAT_FILE:
MSMg01no338_l22.g1 PHD_FILE: MSMg01no338_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:27 2005
(511 letters)
>mm_chr6_138442732_138443649
Length = 918
Score = 936 bits (484), Expect = 0.0
Identities = 507/518 (97%), Gaps = 7/518 (1%)
Strand = Plus / Minus
Query: 1 cttggggaaaattagaatcatgggtgaaatttgttctagattttataaaaccgccgatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cttggggaaaattagaatcatgggtgaaatttgttctagattttataaaaccgccgatgg 543
Query: 61 agtagggaccctgagactaagggtgtgtttcgtattctcacttctcttaactgcttgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agtagggaccctgagactaagggtgtgtttcgtattctcacttctcttaactgcttgatg 483
Query: 121 aagaggcctgagatgtaggttcaccacatagtcgccatatattcaccacatatacgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aagaggcctgagatgtaggttcaccacatagtcgccatatattcaccacatatacgtaaa 423
Query: 181 tatatattcacatatggaggcctgagattcatgtggtg---atggagaaagactctg--- 234
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 422 tatatattcacatatggaggcctgagattcatgtggtgaatatggagaaagactctgaaa 363
Query: 235 -aaaaaaaaaagtcattcaattttgcatttagtaatctctggtgaactccacatcctttt 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaaaaaaaaaagtcattcaattttgcatttagtaatctctggtgaactccacatcctttt 303
Query: 294 tgccttgcgtttttatatagaatcactgtaagaattgtccttgggtcactttactttgct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgccttgcgtttttatatagaatcactgtaagaattgtccttgggtcactttactttgct 243
Query: 354 gtttcaaaaaaacgtattaagtctgtttcttctttaaaaagatttacatgatgtgtaaac 413
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtttcaaaaaaatgtattaggtctgtttcttctttaaaaagatttacatgatgtgtaaac 183
Query: 414 gtgtgtccatgtctgtgggtatgtgcatgtgagtacatatacttggagaggccagaaaag 473
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 182 gtgtgtccatgtctgtgggtatgtgcatgtgactacatgtacttggagaggccagaaaag 123
Query: 474 ggcatcagaggcccccagatctggagttatatgtggtt 511
||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggcatcagaggcccccagatctggagttatatgtggtt 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 918
Length adjustment: 10
Effective length of query: 501
Effective length of database: 908
Effective search space: 454908
Effective search space used: 454908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
