BAC Information

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BAC

Clone NameMSMg01-340B12
Chromosome6 (Build37)
Map Location 68,203,943 - 68,204,577
singlet/doubletsinglet
Overlap geneIgk
Upstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
Downstream geneIgkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340B12.T7 (MSMg01no340_b12.b1)MSMg01-340B12.TJ (MSMg01no340_b12.g1)
ACCAG454217AG454218
length736739
length of high quality
(start - end)		589 (48 - 636)632 (77 - 708)
definitionCHROMAT_FILE: MSMg01no340_b12.b1 PHD_FILE: MSMg01no340_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:03 2005CHROMAT_FILE: MSMg01no340_b12.g1 PHD_FILE: MSMg01no340_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCACACCTTCAAAGAAGACCTAATACCATTACTCTTCAAAC
TATTCCTCAAAAGAGAAACAGAAGGAACACTCCCCAATTCGCTGTATGAA
ACCACAGTTAAGCTGCATATTCTTGGAGGTGGAATGGTTTCTGCTAATAA
GGAACGTGTCACAATTTCCTTTTCTAGAGGTTGTCATAAGAAATTTGTTT
CTACTTCTATCATTTTTAATGTTCCAAAATAGATTTTAAAAACTGTTTGA
GTGCATATTACTTTTTGCTTCAGAAGCTATCATGAATGTTTAAGGGGCAT
TTAACCATTGTAAATTATTTTGGTGACTTAAAAAGTGTCAATGTTTATTG
TATATTTTAAAATAATTTTATTTGTTTAATAAAAAAGAAAAAACATAATC
ACATGTTTATACAACATGAATTTGATATGAAAATTTCTGGTGGAACAAAC
TTTTAGGATTTGGATGTGGTGTCTCTGTTTTAGATGGCATAGTGTCAAAT
AACTGGGGACAAATGTATTTATTATAAAAAGTGTTAATAATGTGGGCAGA
AAATATCAAGGGAAATTGTATGGTGGGGCACCATGGTGAGAACATAGTCC
CTAGTACCATGTGGGGAATCCCTAANAGAATCAGAGAACACAGGAAGAAA
GTGTGATCAGTGTCTACACATTTTGAAGATCTGTGG

NCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCATCTATGAGTTTAGTTTAGAA
AAGTGCTGACTTTCAGAACTGTAAGGAAAATATTTTTTCATCAGTTTTGA
AGATATTGGAATTTAGTCACAGAAACATGATGGAAAACATACTTTGACTT
CTCTGTGCATTTCTAAAATTCTTATTAGTTGATGCCTTTGTGAAAAGAGC
TTTATTTAAGATGAGAGAGTTACACACTTGCTCTTGTCTATTAAATCCTG
TTTAAGGTGTGAATAACCGTGAGGAGAAACACTGGAAAAATTAAATTTAG
TAGAGGATATTCTTGTTTTACAGAATCACAGATGCCTACACATAATAACT
CCAGTGTTTCTGGGCCTGTATTGAAATAGAGCACAGTGCTGGAGGGTACA
TGAAGCAGAGAAGCTTTGTTCAAAGAATAAAAGAAATATAGAGTGACCTC
TAGTACTATAGGTCAAGTGGTAAAGACAAAAACAAACAAAACAGAAAAAA
CAAAAAACAAAAAATAAATAAAACAAAACAACAACAAAAAACTTTTCTCC
AGAGACACTCTGCAGTTACTTTTGTTCCGAACTAGTTGCAGTCTCTCATT
TTCTTCCACTTCCTTATATTTCCTAATGGTATATAAATGTACGAAGGATG
AGTTTTTGAACAAGACACTTGGGAAAACACTATAAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_b12.g1 MSMg01no340_b12.g1 CHROMAT_FILE:
MSMg01no340_b12.g1 PHD_FILE: MSMg01no340_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:03 2005
         (632 letters)



>mm_chr6_68203928_68204963
          Length = 1036

 Score =  832 bits (430), Expect = 0.0
 Identities = 583/638 (91%), Gaps = 11/638 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatctatgagtttagtttagaaaagtgctgactttcagaactgtaaggaaaatatttt 60
           |||||||||||||||||||||||| ||  |||||||||| || | |||||||||||||||
Sbjct: 650 ctcatctatgagtttagtttagaagagaactgactttca-aaatttaaggaaaatatttt 592

                                                                       
Query: 61  ttcatcagttttgaagatattggaatttagtcacagaaacatg--atggaaaacatactt 118
           ||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||
Sbjct: 591 ttcatcagttttgaagatattggaatttagtcacagaa--atgtaatggaaaacatactt 534

                                                                       
Query: 119 tgacttctctgtgcatttctaaaattcttattagttgatgcctttgtgaaaagagcttta 178
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 533 tgacttctctgtgcatttctaaaattcatattagttgatgccattgtgaaaagagcttta 474

                                                                       
Query: 179 tttaagatgagagagttacacacttgctcttgtctattaaatcctgtttaaggtgtgaat 238
           |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 473 tttaagatgagagagttacacaattgctcttgtctataaaatcttgtttaaggtgtgaat 414

                                                                       
Query: 239 aaccgtgaggagaaacactggaaaaattaaatttagtagaggatat-----tcttgtttt 293
           |||  |||||||||| |||||||||||||||||||| ||| |||||     |||||||||
Sbjct: 413 aactatgaggagaaaaactggaaaaattaaatttagaagaagatatgtttgtcttgtttt 354

                                                                       
Query: 294 acagaatcacagatgcctacacataataactccagtgtttctgggcctgtattgaaatag 353
           ||||||||||||| |||||||||| || |||||| |||||||||| ||| ||||||||||
Sbjct: 353 acagaatcacagaggcctacacatcatgactccaatgtttctgggtctggattgaaatag 294

                                                                       
Query: 354 agcacagtgctggagggtacatgaagcagagaagctttgttcaaagaataaaagaaatat 413
           || ||| ||||||||| | ||||||| ||||||||||||||||||| ||||||||| |||
Sbjct: 293 agtacattgctggaggattcatgaagtagagaagctttgttcaaagcataaaagaattat 234

                                                                       
Query: 414 agagtgacctctagtactataggtcaagtggtaaagacaaaaacaaacaaaacagaaaaa 473
           |||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||| ||
Sbjct: 233 agagtgacctgtagtactataggtcatgtggtaaggacaaaaacaatcaaaacagaataa 174

                                                                       
Query: 474 acaaaaaacaaaaaataaataaaacaaaacaacaacaaaaaacttttctccagagacact 533
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 173 acaaaaaacaaaaaataagtaaaacaaaaccacaacaaaaaacttttctccagagacact 114

                                                                       
Query: 534 ctgcagttacttttgttccgaactagttgcagtctctcattttcttccacttccttatat 593
           ||||||||| ||||||||| || || ||||||||||| ||||||||||||||||| || |
Sbjct: 113 ctgcagttatttttgttcctaattaattgcagtctctgattttcttccacttcctaatgt 54

                                                 
Query: 594 ttcctaatggtatataaatgtacgaaggat-gagtttt 630
           | ||||||||||||||||||||| |||||| |||||||
Sbjct: 53  tccctaatggtatataaatgtactaaggattgagtttt 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1036
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1026
Effective search space:   638172
Effective search space used:   638172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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