BAC Information

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BAC

Clone NameMSMg01-340L01
Chromosome6 (Build37)
Map Location 67,185,792 - 67,186,395
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310
Downstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340L01.T7 (MSMg01no340_l01.b1)MSMg01-340L01.TJ (MSMg01no340_l01.g1)
ACCAG454667AG454668
length733734
length of high quality
(start - end)		600 (49 - 648)604 (75 - 678)
definitionCHROMAT_FILE: MSMg01no340_l01.b1 PHD_FILE: MSMg01no340_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:45 2005CHROMAT_FILE: MSMg01no340_l01.g1 PHD_FILE: MSMg01no340_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGATGACTACCGAATGACTGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCATCCACCTCACACCAGTCAGAAAGGCTAAGATCAAAAATTTAGGTA
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCTCCATTGCT
GGTAAGATTGCAAGCTTGTACACCCACTCTGGAAGTCAGTCTGGAGGTTC
CTCAGAAAATTGGACATAGTACTACCAGAAGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCCTATTTATAATAGCCTGAAGCTGGAAAAAACCC
AGATGTTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACAC
AATGGAGCACTACTCAGCTATTAAAAACAATGAATTTATGAATTTCTTGG
ACAAATGGATGTATCTGGAGGATATCATCCTTTGTGAGGTAACCCAATCA
CAAAAGAAGTCATTAGATATGCACTCACTGATAAGTGGATATTAGCCCAG
AAACATAGAACACCCCAGATACAATTTGCAAAACACAAGAAAATCATGAA
GAGGGAAGACCAGTGGGTGGATACTTTGTTCCT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCAAA
CTCAGAGATCTGCCTGCCTCTGTCTCCAAGTGCTGGGATTAAAGGCGTGC
GCTACCACTGCTCAGCAAGGTTTTAATTCCTTGTCCTAAACACGAGTTTT
ATAGTACCTGATAGAAAACACTCATAGTTGATGTTTCCTACATGAGTATA
TGGAAATAATTGAATAAAGAGGTGACTCAGATGGTTTGCTGCACTCATAT
TTTGTTGCAATTTACAGGCAAAAATACCTCTGTGGGAGAGAGATGTTTTA
ATCTAGCATAAAAGATGCTGAGAGGTAGGGGGTATGTTCTCCAGCAAACA
TTCCCAACTCTGAAGTTGCCATGTGCATTGAACTATTTCCCATCATCAAC
CATAATAATGCTGAGGAGGACGTTAATCATGCTGTTTATAGGTTTGTAAA
TGCATTTCTTCCAAAGACCTCAAGTGTTTAATGGACATGACCTAATTTAC
CCTCACAAGTCTAGCCTCCTTTAATAGATGAGGAAACCGAGGCATAAAGA
AGCTGAGTAACTTCTTCAAGGTCAAGCATGTTCCTAGGGAACGGAGCCAG
ATGCCAGACCTCTGCTGTTTCTGCCTAGCTCTGTCTCTCTAGACCTTTGA
GATGATGTGCATGCATCCCATGGCACTAGGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_l01.g1 MSMg01no340_l01.g1 CHROMAT_FILE:
MSMg01no340_l01.g1 PHD_FILE: MSMg01no340_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:45 2005
         (604 letters)



>mm_chr6_67185627_67186630
          Length = 1004

 Score = 1160 bits (600), Expect = 0.0
 Identities = 603/604 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcaaactcagagatctgcctgcctctgtctccaagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 actttgtagaccaggctggcctcaaactcagagatctgcctgcctctgtctccaagtgct 710

                                                                       
Query: 61  gggattaaaggcgtgcgctaccactgctcagcaaggttttaattccttgtcctaaacacg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gggattaaaggcatgcgctaccactgctcagcaaggttttaattccttgtcctaaacacg 650

                                                                       
Query: 121 agttttatagtacctgatagaaaacactcatagttgatgtttcctacatgagtatatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agttttatagtacctgatagaaaacactcatagttgatgtttcctacatgagtatatgga 590

                                                                       
Query: 181 aataattgaataaagaggtgactcagatggtttgctgcactcatattttgttgcaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aataattgaataaagaggtgactcagatggtttgctgcactcatattttgttgcaattta 530

                                                                       
Query: 241 caggcaaaaatacctctgtgggagagagatgttttaatctagcataaaagatgctgagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caggcaaaaatacctctgtgggagagagatgttttaatctagcataaaagatgctgagag 470

                                                                       
Query: 301 gtagggggtatgttctccagcaaacattcccaactctgaagttgccatgtgcattgaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtagggggtatgttctccagcaaacattcccaactctgaagttgccatgtgcattgaact 410

                                                                       
Query: 361 atttcccatcatcaaccataataatgctgaggaggacgttaatcatgctgtttataggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atttcccatcatcaaccataataatgctgaggaggacgttaatcatgctgtttataggtt 350

                                                                       
Query: 421 tgtaaatgcatttcttccaaagacctcaagtgtttaatggacatgacctaatttaccctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtaaatgcatttcttccaaagacctcaagtgtttaatggacatgacctaatttaccctc 290

                                                                       
Query: 481 acaagtctagcctcctttaatagatgaggaaaccgaggcataaagaagctgagtaacttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acaagtctagcctcctttaatagatgaggaaaccgaggcataaagaagctgagtaacttc 230

                                                                       
Query: 541 ttcaaggtcaagcatgttcctagggaacggagccagatgccagacctctgctgtttctgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ttcaaggtcaagcatgttcctagggaacggagccagatgccagacctctgctgtttctgc 170

               
Query: 601 ctag 604
           ||||
Sbjct: 169 ctag 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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