Query= MSMg01no340_m09.b1 MSMg01no340_m09.b1 CHROMAT_FILE:
MSMg01no340_m09.b1 PHD_FILE: MSMg01no340_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:51 2005
(517 letters)
>mm_chr6_115401270_115402187
Length = 918
Score = 967 bits (500), Expect = 0.0
Identities = 509/514 (99%), Gaps = 5/514 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaatatttctgtcttttttcttcaagtttgtgtgttctctgaagtcaagaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattccaaatatttctgtcttttttcttcaagtttgtgtgttctctgaagtcaagaata 455
Query: 65 atatagcaaaggcatggtaaagaacaccaccaacaaaaatacatgaaccagaattctaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atatagcaaaggcatggtaaagaacaccaccaacaaaaatacatgaaccagaattctaat 395
Query: 125 atcgcttctttgttcttatactctgaacattagatatacccagcattttttaaagcagta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcgcttctttgttcttatactctgaacattagatatacccagcattttttaaagcagta 335
Query: 185 ataaccaacacatgtgattataattctgcttttaagctgttttt-aaaaaatatttcaaa 243
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 334 ataaccaacacatgtgattataattctgcttttaagctgtttttaaaaaaatatttcaaa 275
Query: 244 gcaacatatatatcatgataaccattatatttgcatcaagacatcagtttttccaaagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcaacatatatatcatgataaccattatatttgcatcaagacatcagtttttccaaagat 215
Query: 304 ccttttcttaacacacacacacacacacacacacacacacacacacacacacacacacac 363
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ccttttctta----acacacacacacacacacacacacacacacacacacacacacacac 159
Query: 364 acacacacatacacgaataagagtttatagggccaggacactgggttgaaggcctgttga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 acacacacatacacgaataagagtttatagggccaggacactgggttgaaggcctgttga 99
Query: 424 acttcccactaaggatatcaagcaagtagtagaacatgcctatttgtttagtattcattg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 acttcccactaaggatatcaagcaagtagtagaacatgcctatttgtttagtattcattg 39
Query: 484 catgtgccctgccaaatgaagggttcaatctaaa 517
||||||||||||||||||||||||||||||||||
Sbjct: 38 catgtgccctgccaaatgaagggttcaatctaaa 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 31
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_m09.g1 MSMg01no340_m09.g1 CHROMAT_FILE:
MSMg01no340_m09.g1 PHD_FILE: MSMg01no340_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:51 2005
(534 letters)
>mm_chr6_115235068_115236001
Length = 934
Score = 926 bits (479), Expect = 0.0
Identities = 529/565 (93%), Gaps = 31/565 (5%)
Strand = Plus / Plus
Query: 1 tctgagtttaaatatgttagggattcagataaggtccgataaggtatggaaagaggatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tctgagtttaaatatgttagggattcagataaggtccgataaggtatggaaagaggatga 229
Query: 61 ataagatgagttaagcaagtctaagacagacagcaagctgtacgtgtctcagtggagcgt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ataagatgagttaagcaagtgtaagacagacagcaagctgtacgtgtctcagtggagcgt 289
Query: 121 atgtctagctccgggtcagaaaagcctccatcacaggtaagggagagctgggatgagtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgtctagctccgggtcagaaaagcctccatcacaggtaagggagagctgggatgagtcc 349
Query: 181 acaagatccggaggcctgtaggcgagggggggcgg---ttacaaagaattcatttacagt 237
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 350 acaagatccggaggcctgtaggcaagggggggggggggttacaaagaattcatttacagt 409
Query: 238 ttcatagttgaaagcaacaattagtcttattgcctgtttacagatgagaaaactgaggcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttcatagttgaaagcaacaattagtcttattgcctgtttacagatgagaaaactgaggcc 469
Query: 298 caggtaccttggacatttaccaca----------------------------aatgaatg 329
|||||||||||||||||||||||| ||||||||
Sbjct: 470 caggtaccttggacatttaccacagtcatgaagggagttagtgacatagacaaatgaatg 529
Query: 330 agccttaatactgtctttagggtctttagggttaggacttgtccttcctgaaacaaacag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agccttaatactgtctttagggtctttagggttaggacttgtccttcctgaaacaaacag 589
Query: 390 aatgggtttcatttctaaggagaggtgcatagaggcaggtgataggccaggaggaagtgg 449
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 590 aatgggtttcatttctaaggagaggtgtatagaggcaggtgataggccaggaggaagtgg 649
Query: 450 gaagatattgttagccaatgaaaagagcctgagtcaagtctgagtttgcatccaggctct 509
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 650 gaagatattgttagccaatgaaaagagcctgaatcaagtctgagtttgcatccaggctct 709
Query: 510 gctaattattgactgatttgacctt 534
|||||||||||||||||||||||||
Sbjct: 710 gctaattattgactgatttgacctt 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
