Query= MSMg01no341_n02.b1 MSMg01no341_n02.b1 CHROMAT_FILE:
MSMg01no341_n02.b1 PHD_FILE: MSMg01no341_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:10 2005
(538 letters)
>mm_chr6_87630937_87631873
Length = 937
Score = 973 bits (503), Expect = 0.0
Identities = 527/535 (98%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatggtctggccgctgtagttgtggacagttttgttctcaggaatggcaattct 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatggtctgggcgctgtagttgtggacagttttgttctcaggaatggcaattct 263
Query: 64 aatgactttcctcattggcttttgagacttcttggtgaactggtaggcttctgtgatatt 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgactttccttattggcttttgagacttcttggtgaactggtaggcttctgtgatatt 323
Query: 124 tttctgaagagatagatacaagttgttacccataccagacccttctcatgtacagtaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttctgaagagatagatacaagttgttacccataccagacccttctcatgtacagtaaat 383
Query: 184 gttctctgacacagagccaaagtgcagaaactggtcaaaaatcctcgagttccagtggag 243
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 gttctctgacacagagccaaagtgcagaaactggtcaaaaatcctccagttccagtggag 443
Query: 244 tttacagtcacacagccatgacaaaaggccaactagtccaacatgtcactgtccaaagtg 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 tttacagtcacacagccatgacaaaaggccaactagtccaacttgtcactgtccaaagtg 503
Query: 304 gaatttgggggaataaaatcttgagacttcccaaggacactaactacaccacacactgaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaatttgggggaataaaatcttgagacttcccaaggacactaactacaccacacactgaa 563
Query: 364 cctctattactgcatacacctagtagaaatgattaaaaaaaaaacttacagttcaaatgg 423
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 564 cctctattactgcatacacctagtagaaattattaaaaaaaaa-cttacagttcaaatgg 622
Query: 424 tcagaagtatgaggccctttcatgatgtagataggggaccctgtgtcctaaggcagccat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tcagaagtatgaggccctttcatgatgtagataggggaccctgtgtcctaaggcagccat 682
Query: 484 ggctgacttttagtactgtgtttcacagggtatatcaggaacaataggattctcc 538
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 683 agctgacttttagtactgtatttcacagggtatatcaggaacaataggattctcc 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space: 489456
Effective search space used: 489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_n02.g1 MSMg01no341_n02.g1 CHROMAT_FILE:
MSMg01no341_n02.g1 PHD_FILE: MSMg01no341_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:10 2005
(395 letters)
>mm_chr6_87804163_87804957
Length = 795
Score = 756 bits (391), Expect = 0.0
Identities = 394/395 (99%)
Strand = Plus / Minus
Query: 1 caggcgaggcaaataaaccaacaaaccaacaagtagaccaaaccaatctagaatcagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caggcgaggcaaataaaccaacaaaccaacaagtagaccaaaccaatctagaatcagcat 362
Query: 61 tcaattggtagtagcatatgacaaaatgatcctgtttactttatgcctgacattctatga 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaattggtagtagcatatgacagaatgatcctgtttactttatgcctgacattctatga 302
Query: 121 aagctttatattcataattttaatgcttagtcatctacctatcattgattccttttttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagctttatattcataattttaatgcttagtcatctacctatcattgattccttttttag 242
Query: 181 tttagtttttctttgatatttaaaaattttttgtttgtttgtttgtttttcaagacaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttagtttttctttgatatttaaaaattttttgtttgtttgtttgtttttcaagacaggg 182
Query: 241 tttctctgtgtagccctggctgtcctggaacttactttgtagactaggctggcctcaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttctctgtgtagccctggctgtcctggaacttactttgtagactaggctggcctcaaac 122
Query: 301 tcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgccaccacgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgccaccacgc 62
Query: 361 ccggctcaactgtaattgtgtgtgtgtgtgtgtgt 395
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggctcaactgtaattgtgtgtgtgtgtgtgtgt 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
