BAC Information

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BAC

Clone NameMSMg01-343E18
Chromosome6 (Build37)
Map Location 29,715,461 - 29,715,854
singlet/doubletsinglet
Overlap genenone
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream gene4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343E18.T7 (MSMg01no343_e18.b1)MSMg01-343E18.TJ (MSMg01no343_e18.g1)
ACCAG456641AG456642
length750754
length of high quality
(start - end)		478 (33 - 510)394 (66 - 459)
definitionCHROMAT_FILE: MSMg01no343_e18.b1 PHD_FILE: MSMg01no343_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:05 2005CHROMAT_FILE: MSMg01no343_e18.g1 PHD_FILE: MSMg01no343_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAACTCT
TCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTG
GCCTTGAACTTTCTAATGAAATTCAAGACAGTCTATCAGAAGTAAAGTGG
GAAATAGCTTTACAAGGTATGTTTGACCTTGAACTTTCTCTAGTGTTAGG
AGCCTTTTTGTTCCTTTTCACATGTTATCAAGCGGTTAAGGCAGGGCTGA
AAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAG
AGAGTAGGAGCAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCT
TTCCACGGGTCTTGAACCCAAGGAAAAGTTTAGGTCAGGTAAGAATACCT
GGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGATCAATTAGCGGAGGTT
TCTAGGAGAAGGAGCCTATACTCATCACTAGATGAGCTCAAGGAGCCAGT
TCTTAATAGTTCTGAATCAGATGATAAGGCTATTATGGCCTGGAAGGCGC
TCTCCCGAGCAGGTGAAGCCCCTGTGAAACTAATAAAGATCGTCCAAAAA
CCTCCCGAGCCTTCTTCAAATTTGTGGTCCTATGGCCCATGGTGCTTATT
GATTTTTTGTTAATTGCATAATTCCGCTCCTTCTGTGAAAATCTATCATT
CACAATTTAGCCCCCCCTTCATCCATCTTTTGCTTTTCTTCCCCCCTTTA


GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCAGCATTAGTTTCTTTGTTTTCTCTCTTGGACC
TCATGGACCTCATTATTGTCTGCCTGGCTCCTGGAAGCTGAATGAACCAG
ACGAAGGAAAAAGACCTGTAGACCTAAAACGTCTTTTAATATAGTTAATA
GACTTGCGTGTAATCTTCCGGTTTCTAATCTAGTAATTCCACCTTCGAGT
ATGCTTGGTTTGCCTCAGCAACAAAGCTGTGCCTCAGAAGCAGCAGATGA
GTAAGATGGAGCTAGAAAGCCCGAAGAACGTGGTCTGACTGTTGGTTCCA
AGCAATGTTAGAATCTGGGTAAACAGGGGCTAACATCTGTCTCTTTTCAG
GGCTCANACTCCTTACGTTTCATCACCACATCCCCCTGAAGGATCGGCTC
TTCTACTCAGTCATCAATCCTCGTGGTTGGGCAGGTAAACAGCTGGTTGG
CATGAGTTCCTCACATGGCAAGAGGGGTGCCCTGTACCTCCCCCGGGGTT
TGGGGGAAAGGAAAAAACCCCTCTTAATTGGTTTCCCCCGGCCCACCCCT
GAGGATGAAATTTCGGGCTTTTTTTCCTAACGTAAGGATTGTTCTTCACC
CTCCTTGTTGTCAAATTACAAACTCTTTGCCCTTGCAACTATTTTTCTTA
AGAAGATATTTTTTATACTTTCCTATTATACTCTCCCCATCTATATTTTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_e18.g1 MSMg01no343_e18.g1 CHROMAT_FILE:
MSMg01no343_e18.g1 PHD_FILE: MSMg01no343_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:05 2005
         (394 letters)



>mm_chr6_29715261_29716054
          Length = 794

 Score =  702 bits (363), Expect = 0.0
 Identities = 386/394 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagcattagtttctttgttttctctcttggacctcatggacctcattattgtctgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagcattagtttctttgttttctctcttggacctcatggacctcattattgtctgcct 260

                                                                       
Query: 61  ggctcctggaagctgaatgaaccagacgaaggaaaaagacctgtagacctaaaacgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcctggaagctgaatgaaccagacgaaggaaaaagacctgtagacctaaaacgtctt 320

                                                                       
Query: 121 ttaatatagttaatagacttgcgtgtaatcttccggtttctaatctagtaattccacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatatagttaatagacttgcgtgtaatcttccggtttctaatctagtaattccacctt 380

                                                                       
Query: 181 cgagtatgcttggtttgcctcagcaacaaagctgtgcctcagaagcagcagatgagtaag 240
           ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagtacacttggtttgcttcagcaacaaagctgtgcctcagaagcagcagatgagtaag 440

                                                                       
Query: 241 atggagctagaaagcccgaagaacgtggtctgactgttggttccaagcaatgttagaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 441 atggagctagaaagcccgaagaacgtggtctgactgttggttccaggcaatgttaaaatc 500

                                                                       
Query: 301 tgggtaaacaggggctaacatctgtctcttttcagggctcanactccttacgtttcatca 360
           |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tggggaaacaggggctaacatctgtctcttttcagggctcaaactccttacgtttcatca 560

                                             
Query: 361 ccacatccccctgaaggatcggctcttctactca 394
           ||||||||||||||||||||||||||||| ||||
Sbjct: 561 ccacatccccctgaaggatcggctcttctgctca 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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