Query= MSMg01no343_j10.b1 MSMg01no343_j10.b1 CHROMAT_FILE:
MSMg01no343_j10.b1 PHD_FILE: MSMg01no343_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:29 2005
(374 letters)
>mm_chr6_103553712_103554485
Length = 774
Score = 696 bits (360), Expect = 0.0
Identities = 366/368 (99%)
Strand = Plus / Plus
Query: 7 gaattccagtcatatcttcctttggtgatgaacagcagtatggaagtataagctgaatta 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccagtcataacttcctttggtgatgaacagcagtatggaagtataagctgaatta 266
Query: 67 accctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaataggaaccctga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 accctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaataggaaccctga 326
Query: 127 ctaagacatttgattataattaagcaattttgcaaagtatctagttattttaaaataaga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctaagacatttgattataattaagcaattttgcaaagtatctagttattttaaaataaga 386
Query: 187 aagcatttaaaacagtagttttacgtttagtctctttataatttcatcccatgttatttg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagcatttaaaacagtagttttacgtttagtctctttataatttcatcccatgttatttg 446
Query: 247 tccatattcaccctattttctgaactcttcccagagacatgctcccccaattctttaatc 306
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 447 tccatattcaccctattttctgaactcttcccagagacatgttcccccaattctttaatc 506
Query: 307 atccaactttgtgtactgttctcgttgtcattgtttgcttgctttctcaaacacatcagt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atccaactttgtgtactgttctcgttgtcattgtttgcttgctttctcaaacacatcagt 566
Query: 367 tccaatgt 374
||||||||
Sbjct: 567 tccaatgt 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_j10.g1 MSMg01no343_j10.g1 CHROMAT_FILE:
MSMg01no343_j10.g1 PHD_FILE: MSMg01no343_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:29 2005
(392 letters)
>mm_chr6_103728894_103729684
Length = 791
Score = 704 bits (364), Expect = 0.0
Identities = 385/392 (98%), Gaps = 1/392 (0%)
Strand = Plus / Minus
Query: 1 ttcagtattaaaagatgttcatggggtgttagcagaaattacttaattgaaagtatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttcagtattaaaagatgttcatggggtgttagcagaaattacttaattgaaagtatttaa 532
Query: 61 atagacggtggatgatggttctcatgtgggtatgcaaaaaattgatttcattctgtgcaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 531 atagacggtggatgatggttctcatgtgggtatgc-aaaaattgatttcattctgtgcaa 473
Query: 121 cagactgaaccagattccaattaactccatcaattctgattttaaaaataacccgtatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cagactgaaccagattccaattaactccatcaattctgattttaaaaataacccgtatta 413
Query: 181 taaatagtacatgcagcaccaaaaaaaaaaacttgaaagaattttaataaacatatgaaa 240
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 412 taaatagtacatgcagcaccaaaaaaaaaaccctgaaagaattttaataaacatatgaaa 353
Query: 241 agatgtttcttcttatcgcaataaaaatggccactaggagactcaatttgataatttgaa 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 352 agatgtttcttcttatcacaataaaaatggccactaggagactcaatttgataatttaaa 293
Query: 301 agtgaaagcaaatcacaatatgtagcattggcaagaataggcaagatcagctcagacttc 360
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 292 agtgaaagcatatcacaatatgtagcattggcaagaacaggcaagatcagctcagacttc 233
Query: 361 ataagcagttttttttcattgttttcatttta 392
||||||||||||||||||||||||||||||||
Sbjct: 232 ataagcagttttttttcattgttttcatttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space: 299506
Effective search space used: 299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
