BAC Information

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BAC

Clone NameMSMg01-345D03
Chromosome6 (Build37)
Map Location 52,914,336 - 52,914,786
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345D03.T7 (MSMg01no345_d03.b1)MSMg01-345D03.TJ (MSMg01no345_d03.g1)
ACCAG458076AG458077
length752766
length of high quality
(start - end)		478 (118 - 595)451 (84 - 534)
definitionCHROMAT_FILE: MSMg01no345_d03.b1 PHD_FILE: MSMg01no345_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:36 2005CHROMAT_FILE: MSMg01no345_d03.g1 PHD_FILE: MSMg01no345_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTGATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTAC
GGGAACACTTCATTAACATGACCCGCAGTTCTGGTTCCGGAATGAGGGAT
CTTCCTTGCGCCGGTGATGGTTAACCATCCCGGTTTTTCTCATCCCAGGA
TTTCTCGTCCCGGGTTCCGGCACCAACTCTTACACGCGTTCTCACGACCG
GCCAGGAAGAACACAACAAACCAGAATCTTCTGCGGCAAAACTTTTATTG
CTTACATCTTCAGGAGCAAGAGTGCAAGCCCCAAGCCCAAAAACGAAAGC
GAAACCCCGTCCCTATTTAGGAGAGTTATCCTTCGCCTAGGACGTATCAC
TCCCTGATTGGCTGCAGCCCATGGCCGAGTTGTTGCCACGGGGAAGGCAG
AGTACATGGGGTGGAGAAATACCCTTGGCACATGCGCAGATTATTTGTTT
ACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGAGG
GCGGCTCCCAACACAGATGCTCAACAGTAAGAAGAGTTTCTTGACCTGGG
TGCATTAGGAGGATCACACTCAGGTTATTGCTTTGGAGATAGGTGGTGAT
GGCAAGGGCGTGTTTGAAAAAGGAAGAAAATCTGGACCCAAACNTAGGTT
GGTCGCTCATTTGGAATGAGCATTTGTGGAATTCTCCTTTTATAACTTTC
TG

NNNTTAATCGATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACACTGTAGCTTCA
CACAAGCATCATGCCTGGAGTCTATCACAGGGCACCGCTCTTGAATTCCG
TGAATCTTCTGCTCTAAATAAACCAAAGGGAAGAGCTCTGGAGCAGATGA
AGGAAACATACACTGCTTGCATAATCTGGGCACACTGTGGGGTGACTGTC
TTTAAACCCAGGTCTTGCTGCTCACCAGTGTCAGCAGTGACTGTGCTCAG
AATGCCAGCCCGCTCCGTACGGTGTGAAAGTGTGGTGATGTTGCTAGCCC
AGGGTGAAAACTGACTTGAAACAACCGCAATAATCAAGCTCCCTCCAGAC
CCCTGAGCTATGTGAAAGGGCAGATGTAAGGAATAATTAATGCAATTCAA
GGAGCAGCAAGAGCCCACACAGCACTCAAGTTCACAGAAAATAATTGCTA
CCACATTTGGTATGGACTCTAACTATCTGAGAGTCCACCTTATACACATC
AAATAGCCCAAAGCCAGACCTCTAATGCAGGCTGTCACTGACACAAGTGT
TTTTAGACACACTTGGAAGAAATTTTTTATTGCATTACACTGCATTGAGT
TAGAAAATCTGATCCCTCTACATAAATAAATACACTTCCCTCCATAAATT
TATACTCTCTCTTTCCCACTCCATATAACATTCTCCTTTGACACATTCAA
ATAACTTATAAACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_d03.g1 MSMg01no345_d03.g1 CHROMAT_FILE:
MSMg01no345_d03.g1 PHD_FILE: MSMg01no345_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:36 2005
         (451 letters)



>mm_chr6_52914136_52914986
          Length = 851

 Score =  826 bits (427), Expect = 0.0
 Identities = 445/451 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacactgtagcttcacacaagcatcatgcctggagtctatcacagggcaccgctcttg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacactgtagcttcacataagcatcatgcctggagtctatcacagggcaccgctcttg 260

                                                                       
Query: 61  aattccgtgaatcttctgctctaaataaaccaaagggaagagctctggagcagatgaagg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aattccgtgaatcttctgctctaaataaaccaaagggaagaactctggagcagatgaagg 320

                                                                       
Query: 121 aaacatacactgcttgcataatctgggcacactgtggggtgactgtctttaaacccaggt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacgtacactgcttgcataatctgggcacactgtggggtgactgtctttaaacccaggt 380

                                                                       
Query: 181 cttgctgctcaccagtgtcagcagtgactgtgctcagaatgccagcccgctccgtacggt 240
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgctgctcactggtgtcagcagtgactgtgctcagaatgccagcccgctccgtacggt 440

                                                                       
Query: 241 gtgaaagtgtggtgatgttgctagcccagggtgaaaactgacttgaaacaaccgcaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaaagtgtggtgatgttgctagcccagggtgaaaactgacttgaaacaaccgcaataa 500

                                                                       
Query: 301 tcaagctccctccagacccctgagctatgtgaaagggcagatgtaaggaataattaatgc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tcaagctccctccagacccctgagctatgtgaaagggcagatgtaaggaataattaatac 560

                                                                       
Query: 361 aattcaaggagcagcaagagcccacacagcactcaagttcacagaaaataattgctacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattcaaggagcagcaagagcccacacagcactcaagttcacagaaaataattgctacca 620

                                          
Query: 421 catttggtatggactctaactatctgagagt 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 catttggtatggactctaactatctgagagt 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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