NNNNCCCCNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTTAACTCCGAGCCCCATTTTTAATGGGGTTAT
TTGATTTTCTCGAGTCTAATTTATATATATATATATATATATATATATAT
ATATATATATATATATTGGATATTGGCCCGCGCGCCGANNCACGCCCGCC
CCCGGAGCGTGCCCGAGCCGCAGGGGGCCGCGCGCGCGCGCGCGCGCGCG
CGCGCGCCGGGGGCGCGCGCGCGCGCCCGCGCGCGCGCCCCCCCCCCCCC
CTCGCTCTCACACACCGNGCCTGTCGCCGCCTCTCCCCCCATCCCGCCCC
CACCCTCGCGGCCGCTCGCCACTCCCTCCTCTACCACCTCCTCTGGCTCA
AGCTCCACGGGGCCCTCCTGGGTCCCCCCCCACCCCCCCTTACCCCGGCC
CCAGAGCAATGGCGCCCCGCCCCCCGCGCCCCCCCGCCCACCCCCCCCCC
GGCCCCCCCCCCCCCTGCCCCCGACGGCCGGCCCCCCCCCCCCCGCGCCG
CCCCCCCCCCCCCCCCCCCCCGCCCCCCCCGCCCCATCGCCGCCCCGGCC
CCCCCCCCCCGCCCCCCCGCCCCACGCCCCCCCCCCCCCCCGCCGCCCCG
CCCCCCCCCCCCCCCCCCCCCCCNCNCNCNNNNAGCCCGCCGNNCCCCCC
CCCCCCCCCCGCGCCGCGCGCCCCCCCCCCCCGCCCTCCTCGCCCGCCCT
GCCCCCTCCTTCCCCCCCCCCCCCCCCTGCGCGCCCCCCCCG

TCTTTTTCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCTTTACTAA
GCATGATGTTAATATCCTGCAAACCACAGAACCAAGTGTATACATTACAG
CATTTGAACAAATCCCTTTATTCATCGGGCCCTGTTTCTTCTTTAGCTTC
AGCCTCCTGTCTGTGCCTGTCGCCTCTGCTTCCACTCCTTGCATCTTAAA
TTCTCTGGACACAGTGCTACCGATTGTTCTCTAATATCTTGCTGCCTCTC
ATGAGTCTGTATTAGCCATGCAGCTGTCTCATCTTCACGGCCCTTTCATT
ACTTTCTAAATAGCAAGCTTGATTTTGGATTGTTAGGCTCATCTTAAAGG
TTATGTTTGAGAATCATTTCTTAGAACTTGGAGGTAGGAATAATTCCTTG
CCCACTGCATTTTATGCACTCGTTCCAGTTGTTATCATCTATGTAGATAT
TAGATCCATTCCTCATTTTCATGGTATCTGAATGTAGAATTTGTTACAGA
TTAGATAGTAAGTATTTGTTGACTAAACAAGTACTCATTTGCTTTGAAAA
ATAACCTTTAGTTTAATTCACTAGAGCTAAAGTTCTGAAAATAAAGAAGA
GGTCTGTAATCCCTTCCCATTTAGAAAGAACCAAACTCTGAGAACTAAGC
CCAGAAGNCTCTCTCTCTCTCTCTACTTCTTAG

Query= MSMg01no345_k20.g1 MSMg01no345_k20.g1 CHROMAT_FILE:
MSMg01no345_k20.g1 PHD_FILE: MSMg01no345_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:11 2005
         (541 letters)



>mm_chr6_9160549_9161489
          Length = 941

 Score = 1038 bits (537), Expect = 0.0
 Identities = 540/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcctttactaagcatgatgttaatatcctgcaaaccacagaaccaagtgtatacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctctcctttactaagcatgatgttaatatcctgcaaaccacagaaccaaatgtatacatt 260

                                                                       
Query: 61  acagcatttgaacaaatccctttattcatcgggccctgtttcttctttagcttcagcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcatttgaacaaatccctttattcatcgggccctgtttcttctttagcttcagcctc 320

                                                                       
Query: 121 ctgtctgtgcctgtcgcctctgcttccactccttgcatcttaaattctctggacacagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctgtgcctgtcgcctctgcttccactccttgcatcttaaattctctggacacagtg 380

                                                                       
Query: 181 ctaccgattgttctctaatatcttgctgcctctcatgagtctgtattagccatgcagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaccgattgttctctaatatcttgctgcctctcatgagtctgtattagccatgcagctg 440

                                                                       
Query: 241 tctcatcttcacggccctttcattactttctaaatagcaagcttgattttggattgttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcatcttcacggccctttcattactttctaaatagcaagcttgattttggattgttag 500

                                                                       
Query: 301 gctcatcttaaaggttatgtttgagaatcatttcttagaacttggaggtaggaataattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcatcttaaaggttatgtttgagaatcatttcttagaacttggaggtaggaataattc 560

                                                                       
Query: 361 cttgcccactgcattttatgcactcgttccagttgttatcatctatgtagatattagatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgcccactgcattttatgcactcgttccagttgttatcatctatgtagatattagatc 620

                                                                       
Query: 421 cattcctcattttcatggtatctgaatgtagaatttgttacagattagatagtaagtatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattcctcattttcatggtatctgaatgtagaatttgttacagattagatagtaagtatt 680

                                                                       
Query: 481 tgttgactaaacaagtactcatttgctttgaaaaataacctttagtttaattcactagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttgactaaacaagtactcatttgctttgaaaaataacctttagtttaattcactagag 740

            
Query: 541 c 541
           |
Sbjct: 741 c 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)