Query= MSMg01no345_o11.b1 MSMg01no345_o11.b1 CHROMAT_FILE:
MSMg01no345_o11.b1 PHD_FILE: MSMg01no345_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:27 2005
(555 letters)
>mm_chr6_135932109_135933063
Length = 955
Score = 1033 bits (534), Expect = 0.0
Identities = 548/553 (99%), Gaps = 2/553 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttttgt-ttctttacttgacgagtaactagtagacatctacacatgcattaa 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttttgtgtt-tttacttgacgagtaactagtagacatctacacatgcattaa 262
Query: 63 tagtatacaaattatgttttgaaatatgcatatgcatatatgcatcatagaatatttggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagtatacaaattatgttttgaaatatgcatatgcatatatgcatcatagaatatttggg 322
Query: 123 catatgtatgtgcacacatgtatgcacagtgtatgcaaatgtgttgtagggtatgtatgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catatgtatgtgcacacatgtatgcacagtgtatgcaaatgtgttgtagggtatgtatgt 382
Query: 183 acatgtacacatgtgtgtacaggaaagaggtcaacctcagatgccattattcagacagcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acatgtacacatgtgtgtacaggaaagaggtcaacctcagatgccattattcagacagcc 442
Query: 243 atccagtttgacttttgagaaagggtttgtcactgttctggaaactgctaagtaggctag 302
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 atccagtttgacttttgagaaagggtttgtcactggcctggaaactgctaagtaggctag 502
Query: 303 actgcctgagcagtgagcgctgactgcatctacatcaccagtgtgtacatcacgagagag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 actgcctgagcagtgagcgctgactgcatctacatcaccagtgtgtacatcacgagagag 562
Query: 363 tgtgcatcacaggtatgtgtgcctcacaggagtgtgtacatcacaggagtatgtgtgtgc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgtgcatcacaggtatgtgtgcctcacaggagtgtgtacatcacaggagtatgtgtgtgc 622
Query: 423 atagcaggagtgtgtgtacatcacaggagtgtgtgtgtgcatcacaggagtgtgtttgtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atagcaggagtgtgtgtacatcacaggagtgtgtgtgtgcatcacaggagtgtgtttgtg 682
Query: 483 tgcatcacaggagtgtgtacatagcaagagtgtgtgtacatcacanaagtgtatgtgtgc 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 683 tgcatcacaggagtgtgtacatagcaagagtgtgtgtacatcacagaagtgtatgtgtgc 742
Query: 543 atcacaggagtgt 555
|||||||||||||
Sbjct: 743 atcacaggagtgt 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_o11.g1 MSMg01no345_o11.g1 CHROMAT_FILE:
MSMg01no345_o11.g1 PHD_FILE: MSMg01no345_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:27 2005
(168 letters)
>mm_chr6_136111839_136112406
Length = 568
Score = 317 bits (164), Expect = 2e-91
Identities = 167/168 (99%)
Strand = Plus / Minus
Query: 1 acgtcgctcttcctgactgtaactttagtcaccgattattaggctggctgggctaatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acgtcgctcttcctgactgtaactttagtcaccgattattaggctggctgggctaatagt 309
Query: 61 tttttcgcatccttccttctcagcttcctcccttccccgttttaaaataaatgtgaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttttcgcatccttccttctcagcttcctcccttccccgttttaaaataaatgtgaatct 249
Query: 121 caatgtacaatggcaagaacagaatccagatttatgggtctgttttct 168
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaatgtacaatggcaagaacagaatccagatttatgggtctgttttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space: 89600
Effective search space used: 89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
