Query= MSMg01no346_a03.b1 MSMg01no346_a03.b1 CHROMAT_FILE:
MSMg01no346_a03.b1 PHD_FILE: MSMg01no346_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:35 2005
(674 letters)
>mm_chr6_103296724_103297797
Length = 1074
Score = 1265 bits (654), Expect = 0.0
Identities = 668/674 (99%), Gaps = 4/674 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttatactattttactatttggttccaaaagacagatatagtgggatcactga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttatactattttactatttggttccaaaagacagatatagtgggatcactga 263
Query: 64 gccacatgaaatcagtatgccaggagagaagctacattccctggtgggctttagcagaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccacatgaaatcagtatgccaggagagaagctacattccctggtgggctttagcagaat 323
Query: 124 actgctggtgtttctcatcttcacacatgatgcaagataaagtgtcctctgtctctctca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgctggtgtttctcatcttcacacatgatgcaagataaagtgtcctctgtctctctca 383
Query: 184 ggacaggactttacaatccaattatttttactgtcaggaatcattttcttcattcctagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggacaggactttacaatccaattatttttactgtcaggaatcattttcttcattcctagt 443
Query: 244 caaaatttacctctgtaattttcactggtgctatgctaaataattccctctactcatttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaaatttacctctgtaattttcactggtgctatgctaaataattccctctactcatttc 503
Query: 304 tcaatgatttcttgtttgcatatagtaaatctaccccaccctgaatgcattcctttaatc 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcgatgatttcttgtttgcatatagtaaatctaccccaccctgaatgcattcctttaatc 563
Query: 364 agtagatttcttatcatagcacatgcctgtgattttgccctcagcatttgataggctcct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtagatttcttatcatagcacatgcctgtgattttgccctcagcatttgataggctcct 623
Query: 424 ttatcactgtataatctaattggaatgtagacagcactctcttaccccaaacacgtgaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttatcactgtataatctaattggaatgtagacagcactctcttaccccaaacacgtgaaa 683
Query: 484 ctagcaagcatttaaaagacaggatataatgacacgacttaaaggcacagcaacatctta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctagcaagcatttaaaagacaggatataatgacacgacttaaaggcacagcaacatctta 743
Query: 544 taatgttcatcttgctatcagtagagagggtatatatataaatttcttgtgttttccccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taatgttcatcttgctatcagtagagagggtatatatataaatttcttgtgttttccccc 803
Query: 604 agggaatatatataaatatatatatatata-a---atatatatatatatatattagctat 659
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 804 agggaatatatatatatatatatatatatatatatatatatatatatatatattagctat 863
Query: 660 ttatttcatttaca 673
||||||||||||||
Sbjct: 864 ttatttcatttaca 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_a03.g1 MSMg01no346_a03.g1 CHROMAT_FILE:
MSMg01no346_a03.g1 PHD_FILE: MSMg01no346_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:35 2005
(382 letters)
>mm_chr6_103305631_103306412
Length = 782
Score = 464 bits (240), Expect = e-135
Identities = 332/400 (83%), Gaps = 60/400 (15%)
Strand = Plus / Minus
Query: 42 acacagaaaaactgtctcaaaaataaaaacaaaacagaaaaacaaacaaacatatataag 101
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 782 acacagaaaaactgtctcaaaaataaaaacaaaacagaacaacaaacaaacatatataag 723
Query: 102 tatatatatatatatacatatatatataca------------------------------ 131
|||||||||||||||| ||||||||||| |
Sbjct: 722 tatatatatatatatatatatatatatatatatatatatatatatgtatatatatatgta 663
Query: 132 --------------------------tacatatatgtatatgtatgtgtgtgaatacata 165
|||||||||||||||||||||||||||| | |||
Sbjct: 662 tatatatatgtatgtgtatatatatgtacatatatgtatatgtatgtgtgtgaaaagata 603
Query: 166 a--atacacacacacatataaaacctataagtaaacactacagaataagaaataattccc 223
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 602 aacacacacacacacatataaaacctataagtaaacactacagaataagaaataatcccc 543
Query: 224 aactgtgaaagaaatttcaatcacgaaataaacttgtgc-tcaaagttttctagtaacta 282
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 542 aactgtgaaagaaatttcaatcacgaaataaacttgtgcttc-aagttttctagtaacta 484
Query: 283 ctttgccattgatttttgccctgctatgatcccagaagttaacagataactcactatcta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 483 ctttgccattgatttttgccctgctatgatcccagaagttaacagataactcactatgta 424
Query: 343 atagtagttaacattttataaaagagatggaattttagta 382
||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atagtagttaacattttataaaagagatggaattttagta 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
