BAC Information

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BAC

Clone NameMSMg01-346D05
Chromosome6 (Build37)
Map Location 105,799,453 - 105,956,985
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneCntn6, LOC384470, LOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346D05.T7 (MSMg01no346_d05.b1)MSMg01-346D05.TJ (MSMg01no346_d05.g1)
ACCAG458843AG458844
length744736
length of high quality
(start - end)		483 (39 - 521)507 (69 - 575)
definitionCHROMAT_FILE: MSMg01no346_d05.b1 PHD_FILE: MSMg01no346_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:50 2005CHROMAT_FILE: MSMg01no346_d05.g1 PHD_FILE: MSMg01no346_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,956,507 - 105,956,985)(105,799,453 - 105,799,959)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TACCTGCTAATGCTTTTCATTCATTTCAATACATGAGAAGTAGAAAGGTA
TCACCTATGTTTGAAAAGGATAGTTTTCCCAACTCAATGGTTTACATAAA
ATATTAGAGAAGCATTCAACACATAAACAGTAACAGTGTTCTCTTTCACA
GCCAACATAGTAAAAGTTTTATACTATTTTTATCATGGATATTTACTTGA
TGGTAACAACAAAAAGAGCAGAAGCACAAAATTAGGAGGCTTGAGAAGCA
CTGGGTGATAGAGAACTAACTAAAAATAATGAGATACAATAAAAGTCTGA
ATAAATGCAGTAGGAAAACTATGAAGGCTACGATAATCTGGTGCAATAAC
CAATGCTTCTAACCAAGGTTTGGGCTGCTCCTGTATCTGTGAGAAATGAG
AAGGCAGGGAGAGATGAAGTTCACTTTAGAATTATTTGAGAATTTAACAC
ATGAATGGTTCTTTAAAAGTAGATCCTCCCATTTTTCTACGATATGTTAA
AAGTAAAATTATAATTTTATTAACCCTTTTATAACATAATACATTTTGCT
GAAAAAATGCAATCTCTTGAAGTGGTCAAGAACCATCTATTATGCAGGAA
TTTAAGAATTCCTTCAAAATATTTAACCCATACTTGGAGGGCTTGGCCTC
CTTCTGACATTAATGTTTAAGGTCAAATTCCCGTTGCAATAAAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTATAACAATTGCATGTACAAATTATTCAGC
AAATATATTTCTGCAATCCATAAATACTTCATCCTATTACTTGCTATTAT
CAGAAGTCTAAATCATGAAGAGACAAGACATGATACAGTGAGTACTAACA
TGTCAGTAATGTCTAGCTTTTAAGAAAAATATTTGGAAATATGAGGACAC
GATCATAAGTTCTTAAGTAGAAGAAGCAGGTTAGACTGCAAAACAGTGTG
GTTCTAAATTTGTAATCATCAGAGAATTTAATCATGAAAAGTGTTATTAA
AATATTAAAATCTTATGATAAATTTTAATGAGTACTTTCTTGATTTAGCT
TTAACATTTTTCAAAATGAAAATTACATTTTTTCTGATTATAAAAGTAAT
AAAGATCATTGTAGACATTGAAAGCAAAATAGAAAACTACAAATCGCTTA
ATAATGTATGATCCCAATTCTTGAAATGACCTTACTAATCAATTTTCTTT
TATAAAGAANACTTTCCCTTGGCTGTTTACATACTGTGTATTCAACAACC
ACTTCTCATTTAGTAATTGACATGTTTTCATTGCCAAGAAATGGAGACTT
TTGTCATCACTTATTTTTTTTTATTAAGNATTTTCCTCATTTATAATTTC
AAGCTAATCTCAAAAGTCCCCCATACCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_d05.b1 MSMg01no346_d05.b1 CHROMAT_FILE:
MSMg01no346_d05.b1 PHD_FILE: MSMg01no346_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:50 2005
         (483 letters)



>mm_chr6_105956303_105957185
          Length = 883

 Score =  903 bits (467), Expect = 0.0
 Identities = 476/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtacctgctaatgcttttcattcatttcaatacatgagaagtagaaaggtatc 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 683 gaattcagtacctgctaatgcttttcattcatttcaatacataagaagtagaaaggtatc 624

                                                                       
Query: 65  acctatgtttgaaaaggatagttttcccaactcaatggtttacataaaatattagagaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acctatgtttgaaaaggatagttttcccaactcaatggtttacataaaatattagagaag 564

                                                                       
Query: 125 cattcaacacataaacagtaacagtgttctctttcacagccaacatagtaaaagttttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cattcaacacataaacagtaacagtgttctctttcacagccaacatagtaaaagttttat 504

                                                                       
Query: 185 actatttttatcatggatatttacttgatggtaacaacaaaaagagcagaagcacaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 actatttttatcatggatatttacttgatggtaacaacaaaaagagcagaagcacaagat 444

                                                                       
Query: 245 taggaggcttgagaagcactgggtgatagagaactaactaaaaataatgagatacaataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taggaggcttgagaagcactgggtgatagagaactaactaaaaataatgagatacaataa 384

                                                                       
Query: 305 aagtctgaataaatgcagtaggaaaactatgaaggctacgataatctggtgcaataacca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagtctgaataaatgcagtaggaaaactatgaaggctacgataatctggtgcaataacca 324

                                                                       
Query: 365 atgcttctaaccaaggtttgggctgctcctgtatctgtgagaaatgagaaggcagggaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgcttctaaccaaggtttgggctgctcctgtatctgtgagaaatgagaaggcagggaga 264

                                                                      
Query: 425 gatgaagttcactttagaattatttgagaatttaacacatgaatggttctttaaaagta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 gatgaagttcactttagaattatttgagaatttaacacatgaatggttcttaaaaagta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_d05.g1 MSMg01no346_d05.g1 CHROMAT_FILE:
MSMg01no346_d05.g1 PHD_FILE: MSMg01no346_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:50 2005
         (507 letters)



>mm_chr6_105799253_105800159
          Length = 907

 Score =  851 bits (440), Expect = 0.0
 Identities = 490/507 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtataacaattgcatgtacaaattattcagcaaatatatttctgcaatccataaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tgtataacaattgcatgtacaaattattcagcaaatatatttctgcaatccataaataca 260

                                                                       
Query: 61  tcatcctattacttgctattatcagaagtctaaatcatgaagagacaagacatgatacag 120
           |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tcatcctatttcttgctagtatcagaagtctaaatcatgaagagccaagacatgatacag 320

                                                                       
Query: 121 tgagtactaacatgtcagtaatgtctagcttttaagaaaaatatttggaaatatgaggac 180
           |||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagtactaagatatcactaatatctagcttttaagaaaaatatttggaaatatgaggac 380

                                                                       
Query: 181 acgatcataagttcttaagtagaagaagcaggttagactgcaaaacagtgtggttctaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgatcataagttcttaagtagaagaagcaggttagactgcaaaacagtgtggttctaaa 440

                                                                       
Query: 241 tttgtaatcatcagagaatttaatcatgaaaagtgttattaaaatattaaaatcttatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtaatcatcagagaatttaatcatgaaaagtgttattaaaatattaaaatcttatga 500

                                                                       
Query: 301 taaattttaatgagtactttcttgatttagctttaacatttttcaaaatgaaaattacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 501 taaattttaatgagtactttcttgatttagctttaacatttttcaaaataaaaattacaa 560

                                                                       
Query: 361 tttttctgattataaaagtaataaagatcattgtagacattgaaagcaaaatagaaaact 420
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 561 tttttctgattataaaagtaataaagatcattgtagatattgcaagcaaaatagaaaact 620

                                                                       
Query: 421 acaaatcgcttaataatgtatgatcccaattcttgaaatgaccttactaatcaattttct 480
           ||| || |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 acagattgcttaataatatatgatcccaattcctgaaatgaccttactaatcaattttct 680

                                      
Query: 481 tttataaagaanactttcccttggctg 507
           ||||||||||| |||||||||||||||
Sbjct: 681 tttataaagaaaactttcccttggctg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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