BAC Information

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BAC

Clone NameMSMg01-346F19
Chromosome6 (Build37)
Map Location 18,865,547 - 18,865,998
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346F19.T7 (MSMg01no346_f19.b1)MSMg01-346F19.TJ (MSMg01no346_f19.g1)
ACCAG458967AG458968
length816766
length of high quality
(start - end)		84 (60 - 143)457 (64 - 520)
definitionCHROMAT_FILE: MSMg01no346_f19.b1 PHD_FILE: MSMg01no346_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:02 2005CHROMAT_FILE: MSMg01no346_f19.g1 PHD_FILE: MSMg01no346_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGATAA
AGCTCGAATTCAAAAATTTTGCCCTTATGAGATGAGGATGAGGTATATAT
ATATATATATATATATATATATATATATATATATATATATATATCTCCCC
CCACACGCGCGCGGGGTGTGTGTCTCTCTCTCTCTCTGTCGCGCGCGCGC
GCGCGCGCGCGAGAGGGGGGGGCGCGCGCGCGCGCGCGCGCGAGAGAGAG
AGCCCCCCCCAGACACAGACACTGAGTCTCTCTGTGTCNGTGTGTCNCAG
TCCCCGTCTCTTTCTCCCCCGTTCCCCCTTTCTCCCTCCCTTCCCTCTTT
CGTCCCCCTGCCCATCCCTCCTTCCCCTCTCCCCCTCCTCCCTCCCTTCC
TCCCCCCCCCCCCTCTTTTCTCCTTCCCTTCCACCTCCCTCCCCCCTCCC
GCCCACTTTCCCCCCCCCCGGTCCCCCTTTTTTCTACCCCCCCCCCCCCT
TCCCCCTCCCTTCTTTTTTCTCCCCCTTTTTCCCCTTCCGGTCCCCCCCC
TCCCCCCCCTTCCCTCCCCTCGCCCCCCCCCTCTCTCCCCCCTCCCCCCT
CCCCTCTCTCCCTCCCCCCTTCCTTTTTCGCCCCCCCTGTTGTCTTCCCC
TTCCCTCCCTTCCTCTTTTCCCCCCCCCACCCTCCCCCCTCTCCCGCTCA
CTTTCCTCCCTCTCTCTCCTCCCCCCCTCCCCCCCCCCCCTCCTTTCCCC
CCCCCCCCCCTTCCTTTCCCCCGCCCCCCGCTCCCCCTCCTCTCTCCCCC
CTCATCCCCTCCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATACAATGAGGAAGTATAATGTAGCAATTTCTTTTT
AGTTCCATGGATCTTGAGGTAGAATTTCTTAAGGGGGAATATGTTAGGTT
AAATAAATAGAAATGATTACACACTTAGCTTGCTCATGTAGGTGTTTTAT
GTGAATACATTTTCATATGCAAAGTTATTGTTCAAATGGCATCAGGGAAC
AATTTCAAATGAATTAATAGGTTTTAAAAATTAGTTTGGGAAGGTGGACA
TTTGAAAATTTTAACGTAAATCAAAATAAAGTGTTAAAATTTAAAATATC
AGCATTTTGAAGTAATTAGCTAAAATGTCAGCAAGTCAGATTTCTTCAAA
AGCCAATATTTTAAAAGATGTACCCAAACAGATTTTCCTGTGTTTAAAGA
CAATAAACTTTATATCTAACACACTTAATTTGCTAATAAAAATAACCTAT
TCATTCTAAAGAAATTTCTAANAGGCATACTATAAAAGAGCACATTTTTA
TTTCCCAAGGGGCTTCTTTCCAAAGATAAGCAAACTCCCTATCTAAGCCT
TCTTTATGACTCTGTTAAGAACTCTATTAACTTAATCTTGGCTTAAAAGC
CTTCCCAGGCAAGGGACCCAAATGAAAACTGGGTTTTGGAGGCCAAATCA
CCCATGTTTTCCACCTGGTGTTGGGGAACGAGTTGGGTTTTTCCCTTTTA
AACGCCCAAAGGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_f19.g1 MSMg01no346_f19.g1 CHROMAT_FILE:
MSMg01no346_f19.g1 PHD_FILE: MSMg01no346_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:02 2005
         (457 letters)



>mm_chr6_18865347_18866198
          Length = 852

 Score =  764 bits (395), Expect = 0.0
 Identities = 440/457 (96%), Gaps = 5/457 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatacaatgaggaagtataatgtagcaatttctttttagttccatggatcttgaggtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatacaatgaggaagtataatgtagcaatttctttttagttccatggatcttgaggtaga 260

                                                                       
Query: 61  atttcttaagggggaatatgttaggttaaataaatagaaatgattacacacttagcttgc 120
           ||||||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||
Sbjct: 261 atttcttaagggggaatatgttaggt----taaatagaaattattacacacttag-ttgc 315

                                                                       
Query: 121 tcatgtaggtgttttatgtgaatacattttcatatgcaaagttattgttcaaatggcatc 180
           |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 316 tcatgtaggtgttttatgcgaatacatttttatatgcaaaattattgttcaaatggcatc 375

                                                                       
Query: 181 agggaacaatttcaaatgaattaataggttttaaaaattagtttgggaaggtggacattt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 376 agggaacaatttcaaatgaattaataggttttaaaaattagtttggaaaggtggacattt 435

                                                                       
Query: 241 gaaaattttaacgtaaatcaaaataaagtgttaaaatttaaaatatcagcattttgaagt 300
           |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 436 gaaagttttaatgtaaatcaaaataaagttttaaaatttaaaatatcagcattttgaagt 495

                                                                       
Query: 301 aattagctaaaatgtcagcaagtcagatttcttcaaaagccaatattttaaaagatgtac 360
           ||| |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 496 aatgagcttagatgtcagcaagtcacatttcttcaaaagccaatattttaaaagatgtac 555

                                                                       
Query: 361 ccaaacagattttcctgtgtttaaagacaataaactttatatctaacacacttaatttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccaaacagattttcctgtgtttaaagacaataaactttatatctaacacacttaatttgc 615

                                                
Query: 421 taataaaaataacctattcattctaaagaaatttcta 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 616 taataaaaataacctattcattctaaagaaatttcta 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 852
Length adjustment: 10
Effective length of query: 447
Effective length of database: 842
Effective search space:   376374
Effective search space used:   376374
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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