MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-347A08
Chromosome	6 (Build37)
Map Location	51,164,407 - 51,164,885
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream gene	EG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6
Link	Open Mouse BAC browser

Click to get alignment info.

name	Dfna5h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54722 MGI:1889850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041681 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Osbpl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71720 MGI:1918970
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cycs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13063 MGI:88578
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4921507P07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70821 MGI:1918071
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC213320 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:213320
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	EG666302 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666302 MGI:3644146
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG666308 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666308 MGI:3644148
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	EG666310 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666310 MGI:3647078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Npvf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60531 MGI:1926488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040877 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040877
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG625167 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625167 MGI:3643041
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Nfe2l3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18025 MGI:1339958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hnrpa2b1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53379 MGI:104819
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cbx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12417 MGI:108515
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71982 MGI:1919232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041820 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041820
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Skap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54353 MGI:1889206
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666391 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666391
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Hoxa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15394 MGI:96170
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15399 MGI:96174
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxa3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15400 MGI:96175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxa4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15401 MGI:96176
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxa5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15402 MGI:96177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hoxa6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15403 MGI:96178
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dfna5h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350022 GeneID:54722 MGI:1889850
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : deafness, autosomal dominant 5 homolog (human) transcript_id : NM_018769.2

name	LOC100041681 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255156 GeneID:100041681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC100041681 transcript_id : XM_001477075.1

name	Osbpl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802870 GeneID:71720 MGI:1918970
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oxysterol binding protein-like 3 transcript_id : NM_027881.2

name	Cycs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370730 GeneID:13063 MGI:88578
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome c, somatic transcript_id : NM_007808.4

name	4921507P07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347533 GeneID:70821 MGI:1918071
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4921507P07 gene transcript_id : NM_027564.2

name	Npvf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11230795 GeneID:60531 MGI:1926488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuropeptide VF precursor transcript_id : NM_021892.1

name	EG625167 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377375 GeneID:625167 MGI:3643041
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, EG625167 transcript_id : XM_898623.2

name	Nfe2l3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754833 GeneID:18025 MGI:1339958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor, erythroid derived 2, like 3 transcript_id : NM_010903.1

name	Hnrpa2b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109134361 GeneID:53379 MGI:104819
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein A2/B1 transcript_id : NM_016806.2

name	Hnrpa2b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109134360 GeneID:53379 MGI:104819
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heterogeneous nuclear ribonucleoprotein A2/B1 transcript_id : NM_182650.3

name	Cbx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:108860694 GeneID:12417 MGI:108515
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chromobox homolog 3 (Drosophila HP1 gamma) transcript_id : NM_007624.3

name	Snx10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369538 GeneID:71982 MGI:1919232
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 10 transcript_id : NM_028035.3

name	LOC100041820 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255168 GeneID:100041820
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100041820 transcript_id : XM_001477302.1

name	Skap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980887 GeneID:54353 MGI:1889206
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : src family associated phosphoprotein 2 transcript_id : NM_018773.2

name	Hoxa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922691 GeneID:15394 MGI:96170
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box A1 transcript_id : NM_010449.3

name	Hoxa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754229 GeneID:15399 MGI:96174
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box A2 transcript_id : NM_010451.1

name	Hoxa3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66955872 GeneID:15400 MGI:96175
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box A3 transcript_id : NM_010452.2

name	Hoxa4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381148 GeneID:15401 MGI:96176
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box A4 transcript_id : NM_008265.3

name	Hoxa5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130009 GeneID:15402 MGI:96177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box A5 transcript_id : NM_010453.5

name	Hoxa6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27544942 GeneID:15403 MGI:96178
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeo box A6 transcript_id : NM_010454.1

name	Dfna5h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055204 CCDS:CCDS20130.1 GeneID:54722 MGI:1889850
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0035315 - hair cell differentiation [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence ISS] codon_start : 1 note : nonsyndromic hearing impairment protein product : deafness, autosomal dominant 5 protein protein_id : NP_061239.1

name	LOC100041681 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255157 GeneID:100041681
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477125.1

name	Osbpl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21687076 GeneID:71720 MGI:1918970
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0006869 - lipid transport [Evidence IEA]; GO:0008202 - steroid metabolism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : oxysterol-binding protein-related protein 3 product : oxysterol-binding protein-like protein 3 protein_id : NP_082157.1

name	Cycs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681095 CCDS:CCDS20131.1 GeneID:13063 MGI:88578
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0008635 - caspase activation via cytochrome c [Evidence IMP]; GO:0043065 - positive regulation of apoptosis [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : cytochrome c, somatic protein_id : NP_031834.1

name	4921507P07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21389313 CCDS:CCDS20132.1 GeneID:70821 MGI:1918071
definition	codon_start : 1 product : hypothetical protein LOC70821 protein_id : NP_081840.1

name	Npvf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11230796 CCDS:CCDS20133.1 GeneID:60531 MGI:1926488
definition	GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence IEA] codon_start : 1 note : RFamide related peptide product : RFamide-related peptide protein_id : NP_068692.1

name	EG625167 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82901034 GeneID:625167 MGI:3643041
definition	codon_start : 1 product : hypothetical protein protein_id : XP_903716.1

name	Nfe2l3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754834 CCDS:CCDS20134.1 GeneID:18025 MGI:1339958
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nuclear factor, erythroid derived 2, like 3 protein_id : NP_035033.1

name	Hnrpa2b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32880197 GeneID:53379 MGI:104819
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence ISS] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence ISS]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; hnRNP A2/B1; heterogenous nuclear ribonucleoprotein A2/B1 product : heterogeneous nuclear ribonucleoprotein A2/B1 isoform 2 protein_id : NP_872591.1

name	Hnrpa2b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109134362 GeneID:53379 MGI:104819
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence ISS] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence ISS]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; hnRNP A2/B1; heterogenous nuclear ribonucleoprotein A2/B1 product : heterogeneous nuclear ribonucleoprotein A2/B1 isoform 1 protein_id : NP_058086.2

name	Cbx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:108860695 CCDS:CCDS20135.1 GeneID:12417 MGI:108515
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005701 - polytene chromosome chromocenter [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006333 - chromatin assembly or disassembly [Evidence IEA]; GO:0016568 - chromatin modification [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : heterochromatin protein 1 gamma product : chromobox homolog 3 protein_id : NP_031650.3

name	Snx10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560088 CCDS:CCDS20136.1 GeneID:71982 MGI:1919232
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : sorting nexin 10 protein_id : NP_082311.2

name	LOC100041820 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255169 GeneID:100041820
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477352.1

name	Skap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055324 CCDS:CCDS20137.1 GeneID:54353 MGI:1889206
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005886 - plasma membrane [Evidence ISS] GO_process : GO:0008285 - negative regulation of cell proliferation [Evidence IMP] codon_start : 1 note : Src-associated adaptor protein product : SKAP55 homologue protein_id : NP_061243.1

name	Hoxa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84000011 CCDS:CCDS20138.1 GeneID:15394 MGI:96170
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030902 - hindbrain development [Evidence IMP]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0007399 - nervous system development [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : early retinoic acid product : homeobox A1 protein_id : NP_034579.2

name	Hoxa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754230 CCDS:CCDS20139.1 GeneID:15399 MGI:96174
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001709 - cell fate determination [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0048703 - embryonic viscerocranium morphogenesis [Evidence IMP]; GO:0042474 - middle ear morphogenesis [Evidence IMP]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : homeobox protein product : homeobox A2 protein_id : NP_034581.1

name	Hoxa3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46275824 CCDS:CCDS20140.1 GeneID:15400 MGI:96175
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001974 - blood vessel remodeling [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA] [Evidence IMP]; GO:0007389 - pattern specification [Evidence IEA]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeobox A3 protein_id : NP_034582.1

name	Hoxa4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46275810 CCDS:CCDS20142.1 GeneID:15401 MGI:96176
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence TAS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IDA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeobox A4 protein_id : NP_032291.1

name	Hoxa5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754232 CCDS:CCDS20143.1 GeneID:15402 MGI:96177
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeo box A5 protein_id : NP_034583.1

name	Hoxa6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27544943 CCDS:CCDS20144.1 GeneID:15403 MGI:96178
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0007389 - pattern specification [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : homeobox A6 protein_id : NP_034584.1

name	EG666302 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666302
definition	number : 1 pseudo : _no_value

name	EG666308 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666308
definition	number : 1 pseudo : _no_value

name	EG666310 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666310
definition	number : 2 pseudo : _no_value

name	EG666310 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666310
definition	number : 1 pseudo : _no_value

name	LOC100040877 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040877
definition	number : 3 pseudo : _no_value

name	LOC100040877 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040877
definition	number : 2 pseudo : _no_value

name	LOC100040877 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040877
definition	number : 1 pseudo : _no_value

name	LOC666391 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666391
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:207954
definition	standard_name : BB219592

name	(CDS detail)
type	STS
link
xref	UniSTS:124448
definition	standard_name : 42.MHAa90d6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:179371
definition	standard_name : X01756

name	(CDS detail)
type	STS
link
xref	UniSTS:130823
definition	standard_name : D6Mit276

name	(CDS detail)
type	STS
link
xref	UniSTS:124095
definition	standard_name : 34.MMHAP57FLD4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:130660
definition	standard_name : D6Mit119

name	(CDS detail)
type	STS
link
xref	UniSTS:116607
definition	standard_name : D6Mit33

name	(CDS detail)
type	STS
link
xref	UniSTS:130788
definition	standard_name : D6Mit240

name	(CDS detail)
type	STS
link
xref	UniSTS:130789
definition	standard_name : D6Mit240.1

name	(CDS detail)
type	STS
link
xref	UniSTS:130822
definition	standard_name : D6Mit275

name	(CDS detail)
type	STS
link
xref	UniSTS:110956
definition	standard_name : AU046983

name	(CDS detail)
type	STS
link
xref	UniSTS:163385
definition	standard_name : AB013852

name	(CDS detail)
type	STS
link
xref	UniSTS:207955
definition	standard_name : BB463959

name	(CDS detail)
type	STS
link
xref	UniSTS:498450
definition	standard_name : Snx10

name	(CDS detail)
type	STS
link
xref	UniSTS:7162
definition	standard_name : GDB:1317142

name	(CDS detail)
type	STS
link
xref	UniSTS:159506
definition	standard_name : AA960083

name	(CDS detail)
type	STS
link
xref	UniSTS:160949
definition	standard_name : RH118301

name	(CDS detail)
type	STS
link
xref	UniSTS:123642
definition	standard_name : 24.MMHAP36FLH3.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:130904
definition	standard_name : MTH2514

name	(CDS detail)
type	STS
link
xref	UniSTS:130905
definition	standard_name : D6Mit353.1

name	(CDS detail)
type	STS
link
xref	UniSTS:424604
definition	standard_name : REN99807

name	(CDS detail)
type	STS
link
xref	UniSTS:425085
definition	standard_name : REN100288

name	(CDS detail)
type	STS
link
xref	UniSTS:449404
definition	standard_name : stSG609304

name	(CDS detail)
type	STS
link
xref	UniSTS:470556
definition	standard_name : Hoxa1

name	(CDS detail)
type	STS
link
xref	UniSTS:163386
definition	standard_name : M22115

name	(CDS detail)
type	STS
link
xref	UniSTS:124934
definition	standard_name : M22115

name	(CDS detail)
type	STS
link
xref	UniSTS:119889
definition	standard_name : RH94642

name	(CDS detail)
type	STS
link
xref	UniSTS:425099
definition	standard_name : REN100302

name	(CDS detail)
type	STS
link
xref	UniSTS:143360
definition	standard_name : Hoxa1

name	(CDS detail)
type	STS
link
xref	UniSTS:130996
definition	standard_name : D6Mit93

name	(CDS detail)
type	STS
link
xref	UniSTS:143366
definition	standard_name : Hoxa2

name	(CDS detail)
type	STS
link
xref	UniSTS:235444
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:125007
definition	standard_name : M95599

name	(CDS detail)
type	STS
link
xref	UniSTS:143365
definition	standard_name : Hoxa2

name	(CDS detail)
type	STS
link
xref	UniSTS:281753
definition	standard_name : ECD00644

name	(CDS detail)
type	STS
link
xref	UniSTS:165466
definition	standard_name : AI324701

name	(CDS detail)
type	STS
link
xref	UniSTS:425135
definition	standard_name : REN100338

name	(CDS detail)
type	STS
link
xref	UniSTS:290928
definition	standard_name : ECD09887

name	(CDS detail)
type	STS
link
xref	UniSTS:425136
definition	standard_name : REN100339

name	(CDS detail)
type	STS
link
xref	UniSTS:449414
definition	standard_name : stSG609316

name	(CDS detail)
type	STS
link
xref	UniSTS:425160
definition	standard_name : REN100363

name	(CDS detail)
type	STS
link
xref	UniSTS:425161
definition	standard_name : REN100364

name	(CDS detail)
type	STS
link
xref	UniSTS:425162
definition	standard_name : REN100365

name	(CDS detail)
type	STS
link
xref	UniSTS:273050
definition	standard_name : PMC316811P1

name	(CDS detail)
type	STS
link
xref	UniSTS:467536
definition	standard_name : Hoxa3

name	(CDS detail)
type	STS
link
xref	UniSTS:425172
definition	standard_name : REN100375

name	(CDS detail)
type	STS
link
xref	UniSTS:235446
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:425241
definition	standard_name : REN100444

name	(CDS detail)
type	STS
link
xref	UniSTS:284827
definition	standard_name : ECD03747

name	(CDS detail)
type	STS
link
xref	UniSTS:179372
definition	standard_name : AV206827

name	(CDS detail)
type	STS
link
xref	UniSTS:489066
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:297092
definition	standard_name : ECD16077

name	(CDS detail)
type	STS
link
xref	UniSTS:425304
definition	standard_name : REN100507

name	(CDS detail)
type	STS
link
xref	UniSTS:143368
definition	standard_name : Hoxa5

name	(CDS detail)
type	STS
link
xref	UniSTS:143369
definition	standard_name : Hoxa5

name	(CDS detail)
type	STS
link
xref	UniSTS:425308
definition	standard_name : REN100511

name	(CDS detail)
type	STS
link
xref	UniSTS:449442
definition	standard_name : stSG609349

name	(CDS detail)
type	STS
link
xref	UniSTS:231213
definition	standard_name : MARC_6217-6218:992007117:1

name	(CDS detail)
type	STS
link
xref	UniSTS:57649
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:425309
definition	standard_name : REN100512

name	(CDS detail)
type	STS
link
xref	UniSTS:125907
definition	standard_name : Y00208

name	(CDS detail)
type	STS
link
xref	UniSTS:239193
definition	standard_name : Hoxa5

name	(CDS detail)
type	STS
link
xref	UniSTS:425319
definition	standard_name : REN100522

name	(CDS detail)
type	STS
link
xref	UniSTS:425320
definition	standard_name : REN100523

name	(CDS detail)
type	STS
link
xref	UniSTS:425321
definition	standard_name : REN100524

name	(CDS detail)
type	STS
link
xref	UniSTS:143370
definition	standard_name : Hoxa6

name	(CDS detail)
type	STS
link
xref	UniSTS:467537
definition	standard_name : Hoxa6

name	LOC213320 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255130 GeneID:213320
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to crooked neck-like 1 protein pseudo : _no_value transcript_id : XR_032186.1

clone name	MSMg01-496K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352O02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-341K09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-468H24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-491I03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-059B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-136G19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-291G03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-418M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136I19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-138I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346J19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-117K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155P11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-128E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056B15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-115H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068C23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-347A08.T7 (MSMg01no347_a08.b1)	MSMg01-347A08.TJ (MSMg01no347_a08.g1)
ACC	AG459465	AG459466
length	774	838
length of high quality (start - end)	483 (51 - 533)	---
definition	CHROMAT_FILE: MSMg01no347_a08.b1 PHD_FILE: MSMg01no347_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:52 2005	CHROMAT_FILE: MSMg01no347_a08.g1 PHD_FILE: MSMg01no347_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:52 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	AATATTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC GCGGAATTCAGTCTTTCTCCATCGTTCTGGCTTTTCAGAAAACTCTTATT AGCAAGAATAAAAACTGGGAACACTTTGACTACCCCACAGGATAAATAAT ATGGAAAAAAAAAAACTTTTAATGCATCTTAAGGTTTCTACTGATGCGAT GAGACGCCATGACCAAAACACATCTCTTCTATCCACATCACAGTTCATCA TCCAAGGAAGTCAGGACAGGAACTCGAACAGGGCAGGGTCCTGGAGGCAG GAGCTGATGCGGAGGCCATGGAGGTTGCTGCTCGCTGGCTTGCTCTCCTG CCTGCTCGGCCTGCTTTCTTATAGGACCCAGAACCATCAACCCAAGGCCA CCCCAACGACAATAGGCTGGGCCCTTCCCTATCAATCGCTAATTAAGAAA ACAACTTACACGCTTGCCTACAGCCTGATCTACAGTTCCCAGTTGAGGCT CCCTCCTCTCTGATGACTCTAGCTTATATCAAGTTGACATGAGACTTGTC AGCTTATAACGTGAGGTGTTCCTATCACTGAGGCATCTACCCACTACTTA GATGTTTATGGACCACGACCAATTGGGTGTATAAATTGTCACCAAACACC CTTTTATTGAAGCACCGCATTTGCATTTTCTTTTCCCGGATATTCCTTTT ATTTCTCCCTCCTATTATTACCCCCCCCTTCCCCCCTTTCCCCCTCTTAT TTCCCTTTTCTTTATATTCTCTCN	TTCTTTGNNNNNCCTGNCNNCCCCCTGTTTCCCNACTTTANNTGACNCTA TANAATTTTCCNCGNAATTCCNNNNGCTGCTGNACATGNCCTTATAAAGG GAGAGGAATTTAACTGATCTTTTGTTTTTTCTAAAAGATCAATAAGCTAG AGATGGTGGTGGGGTCCCCNNNNCNNNNTTTNNANNNATCCCNNNCCTAT NNTCTTCCNNNCCNNATTTCCNNNNTTTTNNCCCTNCCCTNACCCCCCTT TTGNNCCCNNCCGCTTCCCTTGNTTCCCTGNTCCCCNCCCCCCCCTTNCC CNTTTNNACCCCTTTTTTTTTCNAACCNCCCTTTTCCAAAAAAACCCCCN CCCCCCCTTCCCCNNNNCCCCCCCCCCCTCTCCCNNNNNNCTCCCCAAAC CCTCTCNAACCCCCCCCCCCCCCCCCNNNNNCCTCCCCNCCCCTTTCCCC CCCCCNNTNTCTCTTCCAAACCCCCCNAAACCCTTCTTTCCCCCTCTTTT NNNCNCCNCNCCCCCCCCCNCCCCCCCCCCCCCTCTTTNNCACCCTCCNN CCCACCCCCTTTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCNNNCNCNC CCCNNCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCTTTTCCCCNNNTTT CCCCCCNCCCCCCCCTTTTCCCCCCCCTCTCCCCCCCCCCCCCCCCCCCT TTCCCCTCCCCCCCCCTCCCCCCTCCCCCCCCCCTCNCCCCCCCCCCCCC CCCCCTNNCCCCCCCNCTCCCCCTCCTCTCCCNCCTTCTCCCCTTTTTCC CCCCCCTTTTTTTTTTTCTCTTTTTTTTATTTTTTTTT
quality values	Open. Hide. 6 6 8 8 7 8 6 6 6 6 8 12 25 36 37 14 14 9 14 13 21 25 24 22 26 26 27 37 39 22 18 10 9 10 9 11 11 17 12 12 12 11 11 11 15 10 11 6 6 6 15 19 39 30 31 31 33 33 33 37 37 37 27 19 9 8 8 8 8 8 10 10 22 28 30 33 39 43 48 48 57 59 59 50 50 50 43 43 50 59 57 50 53 53 53 53 57 68 68 68 68 68 68 68 54 68 68 68 68 68 68 68 68 68 68 68 68 50 48 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 57 54 59 59 59 59 54 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 59 57 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 57 57 57 57 57 57 57 59 59 68 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 57 57 57 43 42 57 57 43 43 52 57 57 59 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 59 59 68 68 59 57 57 44 38 24 14 14 14 28 28 35 44 47 57 59 59 59 59 68 68 68 68 68 59 59 59 59 59 59 59 59 59 57 57 59 59 59 68 68 59 59 57 57 59 59 59 68 68 68 68 68 68 57 68 68 68 57 57 57 57 57 57 57 47 47 47 54 59 54 54 54 48 48 48 48 48 57 57 59 59 59 59 47 48 48 48 48 59 48 39 39 39 37 37 37 59 41 36 32 24 18 11 11 11 33 29 47 47 59 59 59 59 48 48 48 57 57 48 48 48 48 48 41 41 47 47 44 59 39 32 31 34 41 41 39 40 41 46 44 43 41 41 43 43 59 59 59 59 47 47 41 41 41 37 32 29 29 37 39 41 41 39 47 31 28 22 19 18 14 21 21 30 34 33 41 36 43 37 43 39 39 30 27 24 28 28 24 25 35 32 32 35 35 39 39 43 39 32 31 20 16 16 25 25 37 37 32 32 31 28 22 26 19 24 25 22 19 15 17 11 11 11 23 11 9 9 14 9 11 13 15 8 8 9 10 10 10 10 19 16 18 24 19 20 23 28 18 20 14 13 13 8 8 8 8 8 10 10 10 12 9 9 10 9 15 15 11 15 8 8 8 8 8 8 8 8 12 9 11 12 15 7 7 7 8 7 8 8 10 10 13 8 8 18 12 10 10 10 10 10 10 9 9 9 10 9 10 11 8 8 8 8 8 8 8 8 6 8 8 6 8 8 10 10 9 10 10 10 11 11 11 13 15 14 21 13 6 6 6 10 10 12 10 10 10 10 9 10 11 9 9 8 8 8 8 8 8 10 7 7 6 6 8 15 17 21 12 15 13 12 9 8 8 8 8 10 12 12 10 7 8 7 7 7 7 12 12 11 11 10 8 8 8 8 10 9 8 8 6 6 8 8 10 8 9 11 16 14 9 8 8 8 10 10 13 21 12 11 11 10 13 13 14 10 8 8 6 6 11 6 10 10 15 10 8 8 8 8 8 8 10 10 9 8 8 12 8 8 8 8 9 9 9 11 3 0	Open. Hide. 7 7 7 7 7 6 3 0 0 0 0 0 3 19 23 3 0 3 0 0 3 7 7 9 7 17 6 6 7 6 6 6 3 0 3 15 19 19 18 3 0 0 3 23 23 3 0 3 27 27 27 3 0 3 7 7 8 9 7 10 3 0 3 3 0 3 21 21 23 23 3 0 0 0 0 3 23 23 37 23 19 3 0 3 9 9 13 3 0 3 21 27 41 43 37 31 35 30 30 24 24 12 15 15 26 18 11 16 16 19 21 20 16 10 12 9 6 6 7 6 6 6 9 8 8 9 9 13 8 8 6 6 8 6 8 8 8 8 8 10 8 8 8 8 8 8 9 9 8 8 8 8 6 6 9 10 9 8 8 9 8 9 8 7 7 7 11 13 3 0 0 0 0 3 0 0 0 0 3 18 3 0 0 3 0 0 0 3 9 10 13 3 0 0 0 3 9 9 9 3 0 0 3 6 6 10 8 3 0 0 0 3 3 0 0 3 11 12 12 11 3 0 0 0 0 3 7 7 3 0 0 3 21 21 3 0 3 11 11 3 0 3 6 7 8 14 14 8 8 8 10 9 3 0 0 3 13 3 0 0 3 14 15 8 7 9 9 17 12 9 9 3 0 3 12 8 15 8 14 3 0 3 10 13 13 3 0 3 9 15 19 26 25 19 10 10 3 0 3 18 3 0 3 7 3 0 0 3 6 8 13 10 11 16 10 11 10 9 12 8 8 3 0 3 10 10 3 0 3 13 9 9 13 10 8 8 6 6 10 16 18 10 8 8 11 15 11 13 3 0 3 11 13 26 26 15 11 8 8 8 10 8 3 0 0 0 0 3 11 8 9 10 21 23 26 16 14 9 9 10 10 11 21 3 0 0 0 0 0 0 3 9 9 19 21 19 10 11 11 19 10 10 10 10 10 3 0 3 17 17 18 21 21 19 23 15 11 14 11 11 17 23 21 13 10 3 0 0 0 0 0 3 8 8 8 13 17 3 0 3 13 18 13 15 21 14 17 30 18 12 9 9 7 8 3 0 0 3 0 3 8 8 10 8 8 8 15 10 9 9 8 17 15 11 17 3 0 3 6 8 12 8 8 9 12 12 14 18 10 9 19 16 21 19 21 15 9 12 10 3 0 0 0 3 0 3 3 0 3 0 3 23 21 24 9 9 7 7 3 0 3 17 21 37 41 37 37 39 31 31 21 21 11 11 10 9 15 3 0 0 3 6 6 8 10 8 8 3 0 0 3 15 9 9 9 8 7 7 7 7 7 7 9 21 21 24 24 24 17 17 17 17 15 12 8 8 8 19 19 21 9 14 8 9 9 9 9 15 8 8 10 3 0 0 0 3 0 3 0 3 7 7 3 0 0 3 7 7 9 9 12 24 24 24 21 19 17 8 8 3 0 3 17 21 33 33 37 24 12 12 12 12 24 29 21 23 11 8 8 6 6 8 14 3 0 0 0 3 17 19 32 28 28 18 21 3 0 3 15 21 32 30 24 24 12 12 9 9 9 9 9 9 24 12 21 15 10 6 6 8 17 19 19 19 8 8 8 19 22 24 24 9 9 9 9 9 17 17 6 6 9 9 9 9 10 10 6 6 6 15 23 37 37 37 37 39 37 33 33 33 21 21 9 10 10 17 15 9 9 9 9 9 9 11 15 3 0 3 17 17 21 21 24 21 26 41 30 25 25 24 24 9 9 7 7 3 0 0 3 17 8 21 21 15 3 0 3 9 11 10 10 22 13 19 18 13 21 8 8 8 17 3 0 3 9 8 8 6 6 8 21 21 25 13 10 11 13 11 11 12 23 29 29 23 25 11 11 15 10 12 25 17 9 9 9 9 13 8 6 6 8 13 22 30 32 17 9 8 8 8 11 17 31 37 37 39 35 31

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no347_a08.b1 MSMg01no347_a08.b1 CHROMAT_FILE:
MSMg01no347_a08.b1 PHD_FILE: MSMg01no347_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:52 2005
         (483 letters)



>mm_chr6_51164204_51165085
          Length = 882

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%), Gaps = 1/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcagtctttctccatcgttctggcttttcagaaaactcttattagcaagaataaaa 63
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagtcttactacatcgttctggcttttcagaaaactcttattagcaagaataaaa 263

                                                                       
Query: 64  actgggaacactttgactaccccacaggataaataatatggaaaaaaaaaaacttttaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 actgggaacactttgactaccccacaggataaataatatggaaaaaaaaaa-cttttaat 322

                                                                       
Query: 124 gcatcttaaggtttctactgatgcgatgagacgccatgaccaaaacacatctcttctatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcatcttaaggtttctactgatgcgatgagacgccatgaccaaaacacatctcttctatc 382

                                                                       
Query: 184 cacatcacagttcatcatccaaggaagtcaggacaggaactcgaacagggcagggtcctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacatcacagttcatcatccaaggaagtcaggacaggaactcgaacagggcagggtcctg 442

                                                                       
Query: 244 gaggcaggagctgatgcggaggccatggaggttgctgctcgctggcttgctctcctgcct 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 gaggcaggagctgatgcggaggccatggagggtgctgctcgctggcttgctctcctgcct 502

                                                                       
Query: 304 gctcggcctgctttcttataggacccagaaccatcaacccaaggccaccccaacgacaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctcggcctgctttcttataggacccagaaccatcaacccaaggccaccccaacgacaat 562

                                                                       
Query: 364 aggctgggcccttccctatcaatcgctaattaagaaaacaacttacacgcttgcctacag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggctgggcccttccctatcaatcgctaattaagaaaacaacttacacgcttgcctacag 622

                                                                       
Query: 424 cctgatctacagttcccagttgaggctccctcctctctgatgactctagcttatatcaag 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 623 cctgatctacagttcccagttgaggctccctcctctctgctgactctagcttatatcaag 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space:   412456
Effective search space used:   412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information